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  5. PSME_00055008-RA

PSME_00055008-RA


Description : (at2g43340 : 149.0) Protein of unknown function (DUF1685); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT2G31560.2); Has 272 Blast hits to 272 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 270; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 298.0) & (original description: no original description)


Gene families : OG_42_0000739 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000739_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00055008-RA
Cluster HCCA clusters: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
409212 No alias Protein of unknown function (DUF1685) 0.02 Orthogroups_2024-Update
444388 No alias Protein of unknown function (DUF1685) 0.02 Orthogroups_2024-Update
At4g33985 No alias Membrane insertase, putative (DUF1685)... 0.03 Orthogroups_2024-Update
Brara.C02197.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Brara.D02629.1 No alias Unknown function 0.05 Orthogroups_2024-Update
GRMZM2G003090 No alias Protein of unknown function (DUF1685) 0.02 Orthogroups_2024-Update
GRMZM2G137120 No alias Protein of unknown function (DUF1685) 0.04 Orthogroups_2024-Update
Glyma.10G163100 No alias Protein of unknown function (DUF1685) 0.04 Orthogroups_2024-Update
Glyma.11G056100 No alias Protein of unknown function (DUF1685) 0.03 Orthogroups_2024-Update
MA_117169g0010 No alias (at1g05870 : 109.0) Protein of unknown function... 0.03 Orthogroups_2024-Update
MA_75571g0010 No alias (at2g43340 : 142.0) Protein of unknown function... 0.06 Orthogroups_2024-Update
Seita.5G415100.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.8G105200.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.008G080900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc06g073450 No alias DUF1685 family protein (AHRD V3.3 *** G7IB02_MEDTR) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
MF GO:0005319 lipid transporter activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006869 lipid transport IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0061024 membrane organization IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:0120009 intermembrane lipid transfer IEP Predicted GO
MF GO:0120013 intermembrane lipid transfer activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR012881 DUF1685 249 303
No external refs found!