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  5. PSME_00056171-RA

PSME_00056171-RA


Description : (at1g58100 : 134.0) TCP family transcription factor ; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT1G35560.1); Has 396 Blast hits to 390 proteins in 36 species: Archae - 0; Bacteria - 3; Metazoa - 45; Fungi - 2; Plants - 334; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). & (reliability: 260.0) & (original description: no original description)


Gene families : OG_42_0000261 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000261_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00056171-RA
Cluster HCCA clusters: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
A4A49_39012 No alias transcription factor tcp8 0.02 Orthogroups_2024-Update
Glyma.10G285900 No alias TCP family transcription factor 0.03 Orthogroups_2024-Update
HORVU5Hr1G117990.1 No alias TCP-type transcription factor 0.03 Orthogroups_2024-Update
Potri.002G152200 No alias TCP family transcription factor 0.03 Orthogroups_2024-Update
Potri.003G167900 No alias TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family... 0.03 Orthogroups_2024-Update
Potri.T044100 No alias TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family... 0.02 Orthogroups_2024-Update
Sobic.003G408400.1 No alias circadian clock activation factor *(TCP20) & TCP-type... 0.03 Orthogroups_2024-Update
Sopen03g035250 No alias TCP family transcription factor 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Predicted GO
MF GO:0004806 triglyceride lipase activity IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006497 protein lipidation IEP Predicted GO
BP GO:0006505 GPI anchor metabolic process IEP Predicted GO
BP GO:0006506 GPI anchor biosynthetic process IEP Predicted GO
BP GO:0006643 membrane lipid metabolic process IEP Predicted GO
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Predicted GO
BP GO:0006664 glycolipid metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
BP GO:0008654 phospholipid biosynthetic process IEP Predicted GO
BP GO:0009247 glycolipid biosynthetic process IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
BP GO:0016052 carbohydrate catabolic process IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
MF GO:0019239 deaminase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0019637 organophosphate metabolic process IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
BP GO:0046467 membrane lipid biosynthetic process IEP Predicted GO
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0090407 organophosphate biosynthetic process IEP Predicted GO
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1903509 liposaccharide metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR017887 TF_TCP_subgr 147 244
No external refs found!