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  5. PSME_00056181-RA

PSME_00056181-RA


Description : (at3g14440 : 662.0) Encodes 9-<i>cis</i>-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. Regulated in response to drought and salinity. Expressed in roots, flowers and seeds. Localized to the chloroplast stroma and thylakoid membrane.; nine-cis-epoxycarotenoid dioxygenase 3 (NCED3); CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 9 (TAIR:AT1G78390.1); Has 2945 Blast hits to 2901 proteins in 493 species: Archae - 16; Bacteria - 796; Metazoa - 281; Fungi - 204; Plants - 893; Viruses - 0; Other Eukaryotes - 755 (source: NCBI BLink). & (reliability: 1324.0) & (original description: no original description)


Gene families : OG_42_0000424 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000424_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00056181-RA
Cluster HCCA clusters: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
A4A49_34874 No alias putative carotenoid cleavage dioxygenase 4, chloroplastic 0.02 Orthogroups_2024-Update
A4A49_35209 No alias 9-cis-epoxycarotenoid dioxygenase nced6, chloroplastic 0.02 Orthogroups_2024-Update
At1g30100 No alias Probable 9-cis-epoxycarotenoid dioxygenase NCED5,... 0.03 Orthogroups_2024-Update
Bradi3g52680 No alias nine-cis-epoxycarotenoid dioxygenase 4 0.03 Orthogroups_2024-Update
Brara.I04483.1 No alias carotenoid cleavage dioxygenase *(CCD1) & EC_1.13... 0.02 Orthogroups_2024-Update
Glyma.08G096200 No alias nine-cis-epoxycarotenoid dioxygenase 5 0.04 Orthogroups_2024-Update
Glyma.15G250100 No alias nine-cis-epoxycarotenoid dioxygenase 3 0.14 Orthogroups_2024-Update
HORVU5Hr1G008050.1 No alias EC_1.13 oxidoreductase acting on single donor with... 0.02 Orthogroups_2024-Update
HORVU5Hr1G054970.1 No alias EC_1.13 oxidoreductase acting on single donor with... 0.03 Orthogroups_2024-Update
MA_10425950g0010 No alias (at4g19170 : 581.0) chloroplast-targeted member of a... 0.03 Orthogroups_2024-Update
MA_10428396g0010 No alias (at4g19170 : 530.0) chloroplast-targeted member of a... 0.03 Orthogroups_2024-Update
MA_10434448g0010 No alias (at3g14440 : 592.0) Encodes ... 0.02 Orthogroups_2024-Update
PSME_00053495-RA No alias (at3g14440 : 677.0) Encodes ... 0.02 Orthogroups_2024-Update
Potri.011G112400 No alias nine-cis-epoxycarotenoid dioxygenase 3 0.02 Orthogroups_2024-Update
Pp1s412_7V6 No alias F3F9.10; 9-cis-epoxycarotenoid dioxygenase, putative /... 0.02 Orthogroups_2024-Update
Seita.2G035400.1 No alias EC_1.13 oxidoreductase acting on single donor with... 0.04 Orthogroups_2024-Update
Sobic.001G155300.1 No alias EC_1.13 oxidoreductase acting on single donor with... 0.02 Orthogroups_2024-Update
Solyc01g087260 No alias carotenoid cleavage dioxygenase 1B 0.02 Orthogroups_2024-Update
Solyc08g075490 No alias 9-cis-epoxycarotenoid dioxygenase, putative (AHRD V3.3... 0.03 Orthogroups_2024-Update
evm.model.tig00001071.14 No alias (at3g63520 : 102.0) Encodes a protein with... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR004294 Carotenoid_Oase 139 606
No external refs found!