- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : (at1g11290 : 607.0) Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.; CHLORORESPIRATORY REDUCTION22 (CRR22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48258 Blast hits to 14436 proteins in 289 species: Archae - 1; Bacteria - 2; Metazoa - 166; Fungi - 164; Plants - 47192; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink). & (q76c99|rf1_orysa : 124.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1214.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Pseudotsuga release: PSME_00056218-RA | |
| Cluster | HCCA clusters: Cluster_42 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Bradi1g36010 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Bradi4g40340 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| MA_110266g0010 | No alias | (at1g11290 : 558.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
| MA_118886g0010 | No alias | (at2g22070 : 615.0) pentatricopeptide (PPR)... | 0.06 | Orthogroups_2024-Update | |
| MA_126037g0020 | No alias | (at4g02750 : 474.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| MA_138190g0010 | No alias | (at1g11290 : 553.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
| MA_138676g0010 | No alias | (at3g49170 : 755.0) embryo defective 2261 (EMB2261);... | 0.04 | Orthogroups_2024-Update | |
| MA_141731g0010 | No alias | (at4g02750 : 772.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| MA_14381g0010 | No alias | (at3g12770 : 611.0) Encodes a pentatricopeptide repeat... | 0.03 | Orthogroups_2024-Update | |
| MA_14938g0010 | No alias | (at2g22070 : 608.0) pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
| MA_16917g0010 | No alias | (at4g13650 : 578.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
| MA_185098g0010 | No alias | (at3g49170 : 649.0) embryo defective 2261 (EMB2261);... | 0.07 | Orthogroups_2024-Update | |
| MA_230261g0010 | No alias | (at4g13650 : 756.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
| MA_440697g0010 | No alias | (at4g18750 : 611.0) Encodes a pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
| MA_465411g0010 | No alias | (at4g18750 : 483.0) Encodes a pentatricopeptide (PPR)... | 0.05 | Orthogroups_2024-Update | |
| MA_472579g0010 | No alias | (at4g33170 : 615.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| MA_502206g0010 | No alias | (at1g20230 : 427.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
| MA_52613g0020 | No alias | (at4g33170 : 570.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
| MA_75255g0010 | No alias | (at4g33170 : 685.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| MA_95261g0010 | No alias | (at1g11290 : 556.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
| MA_98224g0010 | No alias | (at4g13650 : 670.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
| Potri.006G181800 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Seita.4G008500.1 | No alias | RNA editing factor *(CRR22) | 0.03 | Orthogroups_2024-Update | |
| Seita.7G324400.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Sopen02g039140 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
| Sopen03g028590 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen03g034990 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen11g029050 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004176 | ATP-dependent peptidase activity | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR032867 | DYW_dom | 733 | 857 |
| IPR002885 | Pentatricopeptide_repeat | 534 | 555 |
| IPR002885 | Pentatricopeptide_repeat | 635 | 658 |
| IPR002885 | Pentatricopeptide_repeat | 433 | 454 |
| IPR002885 | Pentatricopeptide_repeat | 458 | 506 |
| IPR002885 | Pentatricopeptide_repeat | 357 | 405 |
| IPR002885 | Pentatricopeptide_repeat | 559 | 606 |
| IPR002885 | Pentatricopeptide_repeat | 152 | 197 |
| IPR002885 | Pentatricopeptide_repeat | 252 | 305 |
| No external refs found! |