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  5. PSME_00056296-RA

PSME_00056296-RA


Description : (at4g13650 : 664.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G16480.1); Has 61118 Blast hits to 14026 proteins in 284 species: Archae - 2; Bacteria - 18; Metazoa - 154; Fungi - 167; Plants - 59907; Viruses - 0; Other Eukaryotes - 870 (source: NCBI BLink). & (q76c99|rf1_orysa : 160.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1328.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00056296-RA
Cluster HCCA clusters: Cluster_184

Target Alias Description ECC score Gene Family Method Actions
129973 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
134551 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
94907 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g59950 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.04G057300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU0Hr1G018170.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU3Hr1G061600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
MA_110266g0010 No alias (at1g11290 : 558.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
MA_141731g0010 No alias (at4g02750 : 772.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_193080g0010 No alias (at4g33170 : 603.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_43615g0010 No alias (at1g11290 : 687.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
Potri.013G145000 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Seita.8G097200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.006G153300.2 No alias RNA editing factor *(MEF21) 0.02 Orthogroups_2024-Update
Solyc01g112200 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc02g065030 No alias No description available 0.02 Orthogroups_2024-Update
Solyc02g094480 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen03g028590 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen06g022100 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen11g029050 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0004455 ketol-acid reductoisomerase activity IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006643 membrane lipid metabolic process IEP Predicted GO
BP GO:0006664 glycolipid metabolic process IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
BP GO:0008654 phospholipid biosynthetic process IEP Predicted GO
MF GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity IEP Predicted GO
BP GO:0009081 branched-chain amino acid metabolic process IEP Predicted GO
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Predicted GO
BP GO:0009245 lipid A biosynthetic process IEP Predicted GO
BP GO:0009247 glycolipid biosynthetic process IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
MF GO:0019213 deacetylase activity IEP Predicted GO
BP GO:0043461 proton-transporting ATP synthase complex assembly IEP Predicted GO
BP GO:0046467 membrane lipid biosynthetic process IEP Predicted GO
BP GO:0046493 lipid A metabolic process IEP Predicted GO
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Predicted GO
BP GO:1901269 lipooligosaccharide metabolic process IEP Predicted GO
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Predicted GO
BP GO:1903509 liposaccharide metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 65 112
IPR002885 Pentatricopeptide_repeat 469 516
IPR002885 Pentatricopeptide_repeat 670 718
IPR002885 Pentatricopeptide_repeat 570 615
IPR002885 Pentatricopeptide_repeat 266 314
IPR002885 Pentatricopeptide_repeat 166 213
IPR002885 Pentatricopeptide_repeat 368 407
IPR032867 DYW_dom 844 968
IPR002885 Pentatricopeptide_repeat 241 264
IPR002885 Pentatricopeptide_repeat 746 769
IPR002885 Pentatricopeptide_repeat 443 468
IPR002885 Pentatricopeptide_repeat 141 165
No external refs found!