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Description : (at3g23020 : 771.0) Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G73710.1); Has 56373 Blast hits to 14756 proteins in 361 species: Archae - 8; Bacteria - 288; Metazoa - 580; Fungi - 796; Plants - 52865; Viruses - 0; Other Eukaryotes - 1836 (source: NCBI BLink). & (q76c99|rf1_orysa : 188.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1542.0) & (original description: no original description)
Gene families : OG_42_0002876 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002876_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Pseudotsuga release: PSME_00056442-RA | |
| Cluster | HCCA clusters: Cluster_42 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Bradi1g28220 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.10G193100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| LOC_Os07g28900 | No alias | PPR repeat domain containing protein, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| Pp1s53_250V6 | No alias | No description available | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005488 | binding | IEP | Predicted GO |
| MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
| MF | GO:0043167 | ion binding | IEP | Predicted GO |
| MF | GO:0043169 | cation binding | IEP | Predicted GO |
| MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR033443 | PPR_long | 491 | 606 |
| IPR002885 | Pentatricopeptide_repeat | 821 | 869 |
| IPR002885 | Pentatricopeptide_repeat | 718 | 760 |
| IPR002885 | Pentatricopeptide_repeat | 266 | 311 |
| IPR002885 | Pentatricopeptide_repeat | 140 | 186 |
| IPR002885 | Pentatricopeptide_repeat | 334 | 382 |
| IPR002885 | Pentatricopeptide_repeat | 616 | 646 |
| IPR002885 | Pentatricopeptide_repeat | 686 | 715 |
| IPR002885 | Pentatricopeptide_repeat | 447 | 465 |
| IPR002885 | Pentatricopeptide_repeat | 654 | 679 |
| No external refs found! |