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  5. PSME_00056761-RA

PSME_00056761-RA


Description : (at3g19380 : 247.0) plant U-box 25 (PUB25); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 26 (TAIR:AT1G49780.1); Has 2521 Blast hits to 2449 proteins in 133 species: Archae - 0; Bacteria - 22; Metazoa - 177; Fungi - 24; Plants - 2091; Viruses - 3; Other Eukaryotes - 204 (source: NCBI BLink). & (q64ha9|spl11_orysa : 158.0) Spotted leaf protein 11 (Spotted leaf11) (Cell death-related protein SPL11) - Oryza sativa (Rice) & (reliability: 494.0) & (original description: no original description)


Gene families : OG_42_0000112 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000112_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00056761-RA
Cluster HCCA clusters: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
416356 No alias plant U-box 24 0.04 Orthogroups_2024-Update
426053 No alias plant U-box 24 0.04 Orthogroups_2024-Update
A4A49_33780 No alias e3 ubiquitin-protein ligase pub23 0.02 Orthogroups_2024-Update
A4A49_38562 No alias u-box domain-containing protein 27 0.03 Orthogroups_2024-Update
At2g35930 No alias E3 ubiquitin-protein ligase PUB23... 0.02 Orthogroups_2024-Update
At3g18710 No alias RING-type E3 ubiquitin transferase... 0.02 Orthogroups_2024-Update
At5g64660 No alias U-box domain-containing protein 27... 0.04 Orthogroups_2024-Update
Bradi1g44390 No alias ARM repeat superfamily protein 0.04 Orthogroups_2024-Update
Bradi5g09720 No alias plant U-box 22 0.03 Orthogroups_2024-Update
Brara.E02265.1 No alias U-Box-group-III E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
GRMZM2G071484 No alias plant U-box 22 0.03 Orthogroups_2024-Update
GRMZM2G151204 No alias CYS, MET, PRO, and GLY protein 1 0.06 Orthogroups_2024-Update
GRMZM2G168980 No alias plant U-box 23 0.03 Orthogroups_2024-Update
Glyma.02G196301 No alias plant U-box 24 0.04 Orthogroups_2024-Update
Glyma.03G202600 No alias plant U-box 22 0.05 Orthogroups_2024-Update
Glyma.07G106000 No alias ARM repeat superfamily protein 0.02 Orthogroups_2024-Update
Glyma.08G000400 No alias plant U-box 25 0.02 Orthogroups_2024-Update
Glyma.10G081900 No alias plant U-box 23 0.01 Orthogroups_2024-Update
Glyma.12G189000 No alias plant U-box 23 0.02 Orthogroups_2024-Update
Glyma.18G042100 No alias ARM repeat superfamily protein 0.03 Orthogroups_2024-Update
HORVU0Hr1G003810.1 No alias E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
HORVU2Hr1G074130.1 No alias E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
HORVU2Hr1G076470.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G064070.1 No alias E3 ubiquitin ligase 0.06 Orthogroups_2024-Update
HORVU6Hr1G077120.1 No alias E3 ubiquitin ligase 0.06 Orthogroups_2024-Update
HORVU6Hr1G089560.1 No alias E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Kfl00376_0010 kfl00376_0010_v1.... (at2g28830 : 87.8) PLANT U-BOX 12 (PUB12); FUNCTIONS IN:... 0.02 Orthogroups_2024-Update
LOC_Os04g35680 No alias U-box domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g03440 No alias avr9/Cf-9 rapidly elicited protein 74, putative, expressed 0.04 Orthogroups_2024-Update
MA_33190g0010 No alias (at2g35930 : 324.0) Encodes a cytoplasmically localized... 0.03 Orthogroups_2024-Update
MA_410546g0010 No alias (at2g35930 : 239.0) Encodes a cytoplasmically localized... 0.04 Orthogroups_2024-Update
MA_83739g0020 No alias (at1g49780 : 403.0) plant U-box 26 (PUB26); FUNCTIONS... 0.03 Orthogroups_2024-Update
Mp3g11730.1 No alias E3 ubiquitin ligase (PUB) 0.02 Orthogroups_2024-Update
Mp7g11000.1 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.02 Orthogroups_2024-Update
PSME_00022617-RA No alias (at3g52450 : 247.0) Encodes a cytoplasmically localized... 0.04 Orthogroups_2024-Update
PSME_00026834-RA No alias (at3g19380 : 258.0) plant U-box 25 (PUB25); FUNCTIONS... 0.02 Orthogroups_2024-Update
PSME_00043035-RA No alias (at3g52450 : 95.9) Encodes a cytoplasmically localized... 0.04 Orthogroups_2024-Update
PSME_00043995-RA No alias (at1g49780 : 227.0) plant U-box 26 (PUB26); FUNCTIONS... 0.05 Orthogroups_2024-Update
PSME_00054803-RA No alias (at3g52450 : 283.0) Encodes a cytoplasmically localized... 0.04 Orthogroups_2024-Update
PSME_00056652-RA No alias (at2g35930 : 195.0) Encodes a cytoplasmically localized... 0.04 Orthogroups_2024-Update
Potri.001G216100 No alias plant U-box 23 0.03 Orthogroups_2024-Update
Potri.001G216300 No alias plant U-box 24 0.03 Orthogroups_2024-Update
Potri.002G070500 No alias plant U-box 29 0.06 Orthogroups_2024-Update
Potri.005G057500 No alias ARM repeat superfamily protein 0.02 Orthogroups_2024-Update
Potri.005G189800 No alias plant U-box 29 0.03 Orthogroups_2024-Update
Potri.006G202600 No alias plant U-box 22 0.03 Orthogroups_2024-Update
Potri.006G202700 No alias plant U-box 24 0.04 Orthogroups_2024-Update
Potri.007G110600 No alias ARM repeat superfamily protein 0.03 Orthogroups_2024-Update
Potri.009G016100 No alias plant U-box 24 0.03 Orthogroups_2024-Update
Potri.009G100200 No alias plant U-box 26 0.04 Orthogroups_2024-Update
Potri.014G101100 No alias plant U-box 23 0.03 Orthogroups_2024-Update
Potri.016G069500 No alias plant U-box 24 0.03 Orthogroups_2024-Update
Potri.017G135000 No alias ARM repeat superfamily protein 0.05 Orthogroups_2024-Update
Pp1s109_251V6 No alias u-box domain-containing protein 0.04 Orthogroups_2024-Update
Seita.1G186200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.4G109000.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.7G104100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G474100.1 No alias E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Sobic.001G441100.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.003G367000.1 No alias E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Sobic.004G169200.1 No alias E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Sobic.004G169900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.004G245100.1 No alias E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Solyc01g005160 No alias Avr9/Cf-9 rapidly elicited protein 1 0.05 Orthogroups_2024-Update
Solyc04g008100 No alias U-box domain-containing protein (AHRD V3.3 *** A0A0A0RAL4_9ROSI) 0.05 Orthogroups_2024-Update
Solyc11g068940 No alias U-box domain-containing family protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA InterProScan predictions
BP GO:0016567 protein ubiquitination IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006163 purine nucleotide metabolic process IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006732 coenzyme metabolic process IEP Predicted GO
BP GO:0006753 nucleoside phosphate metabolic process IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006771 riboflavin metabolic process IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
MF GO:0008131 primary amine oxidase activity IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009117 nucleotide metabolic process IEP Predicted GO
BP GO:0009150 purine ribonucleotide metabolic process IEP Predicted GO
BP GO:0009231 riboflavin biosynthetic process IEP Predicted GO
BP GO:0009259 ribonucleotide metabolic process IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
BP GO:0015672 monovalent inorganic cation transport IEP Predicted GO
BP GO:0015936 coenzyme A metabolic process IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
BP GO:0017144 drug metabolic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0019637 organophosphate metabolic process IEP Predicted GO
BP GO:0019693 ribose phosphate metabolic process IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034220 ion transmembrane transport IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042726 flavin-containing compound metabolic process IEP Predicted GO
BP GO:0042727 flavin-containing compound biosynthetic process IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
MF GO:0048038 quinone binding IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051186 cofactor metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
BP GO:0072521 purine-containing compound metabolic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
BP GO:0098655 cation transmembrane transport IEP Predicted GO
BP GO:0098660 inorganic ion transmembrane transport IEP Predicted GO
BP GO:0098662 inorganic cation transmembrane transport IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901135 carbohydrate derivative metabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003613 Ubox_domain 18 89
No external refs found!