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  5. PSME_00056956-RA

PSME_00056956-RA


Description : (at2g40830 : 186.0) Encodes a putative RING-H2 finger protein RHC1a.; RING-H2 finger C1A (RHC1A); FUNCTIONS IN: zinc ion binding; LOCATED IN: cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G56580.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 352.0) & (original description: no original description)


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00056956-RA
Cluster HCCA clusters: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
A4A49_25008 No alias e3 ubiquitin-protein ligase cip8 0.02 Orthogroups_2024-Update
A4A49_41691 No alias e3 ubiquitin-protein ligase sdir1 0.03 Orthogroups_2024-Update
At1g14200 No alias At1g14200 [Source:UniProtKB/TrEMBL;Acc:Q9XI67] 0.03 Orthogroups_2024-Update
At1g26800 No alias E3 ubiquitin-protein ligase MPSR1... 0.03 Orthogroups_2024-Update
At3g19950 No alias RING/U-box superfamily protein... 0.02 Orthogroups_2024-Update
At3g30460 No alias RING/U-box superfamily protein... 0.02 Orthogroups_2024-Update
At3g60080 No alias At3g60080 [Source:UniProtKB/TrEMBL;Acc:Q9M1D5] 0.04 Orthogroups_2024-Update
Bradi1g52440 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g34010 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g38870 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Brara.C00964.1 No alias signal transducer of abscisic acid perception *(AIP2) 0.04 Orthogroups_2024-Update
Brara.C02094.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.G00930.1 No alias E3 ubiquitin ligase *(SNIPER) 0.06 Orthogroups_2024-Update
Brara.G01814.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.H00234.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.H02157.1 No alias E3 ubiquitin ligase *(SNIPER) 0.03 Orthogroups_2024-Update
Brara.I04140.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Cre10.g422050 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Glyma.09G165200 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.10G285300 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.17G108900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G051760.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os03g22830 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.04 Orthogroups_2024-Update
LOC_Os05g41520 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g26400 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.04 Orthogroups_2024-Update
LOC_Os12g04450 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_219769g0010 No alias (at5g20910 : 155.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_281830g0010 No alias (at5g08139 : 89.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_44557g0010 No alias (at5g64920 : 169.0) Encodes a RING-H2 protein that... 0.03 Orthogroups_2024-Update
MA_474338g0010 No alias (at2g39720 : 83.2) Encodes a putative RING-H2 finger... 0.03 Orthogroups_2024-Update
Potri.005G090500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Pp1s161_109V6 No alias No description available 0.01 Orthogroups_2024-Update
Seita.2G181600.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Seita.4G001100.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.8G172700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc03g098590 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT3G19950.3) 0.02 Orthogroups_2024-Update
Sopen03g029300 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen04g004300 No alias Ring finger domain 0.02 Orthogroups_2024-Update
evm.model.contig_2210.2 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
evm.model.contig_4448.17 No alias (at3g19950 : 129.0) RING/U-box superfamily protein;... 0.01 Orthogroups_2024-Update


Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEP Predicted GO
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006487 protein N-linked glycosylation IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 179 221
IPR039525 RNF126-like_zinc-ribbon 8 38
No external refs found!