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  5. PSME_00057187-RA

PSME_00057187-RA


Description : (at1g11290 : 659.0) Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.; CHLORORESPIRATORY REDUCTION22 (CRR22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48258 Blast hits to 14436 proteins in 289 species: Archae - 1; Bacteria - 2; Metazoa - 166; Fungi - 164; Plants - 47192; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink). & (q76c99|rf1_orysa : 107.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1318.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00057187-RA
Cluster HCCA clusters: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
150456 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
At3g20730 No alias Pentatricopeptide repeat-containing protein At3g20730... 0.02 Orthogroups_2024-Update
At5g16860 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.02 Orthogroups_2024-Update
Bradi3g37252 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.C03290.1 No alias RNA editing factor *(MEF12) 0.03 Orthogroups_2024-Update
Brara.G01483.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.J01291.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU7Hr1G051030.9 No alias RNA editing factor *(REME1) 0.03 Orthogroups_2024-Update
MA_103380g0010 No alias (at3g24000 : 608.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_10430355g0010 No alias (at1g11290 : 469.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
MA_110266g0010 No alias (at1g11290 : 558.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
MA_118886g0010 No alias (at2g22070 : 615.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
MA_124868g0020 No alias (at4g13650 : 517.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_135075g0020 No alias (at3g57430 : 714.0) Encodes a chloroplast RNA editing... 0.05 Orthogroups_2024-Update
MA_138676g0010 No alias (at3g49170 : 755.0) embryo defective 2261 (EMB2261);... 0.03 Orthogroups_2024-Update
MA_140591g0010 No alias (at1g11290 : 675.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
MA_141731g0010 No alias (at4g02750 : 772.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
MA_16917g0010 No alias (at4g13650 : 578.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_183738g0010 No alias (at3g12770 : 617.0) Encodes a pentatricopeptide repeat... 0.04 Orthogroups_2024-Update
MA_193080g0010 No alias (at4g33170 : 603.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
MA_20746g0010 No alias (at1g11290 : 522.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
MA_25729g0010 No alias (at2g22070 : 551.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
MA_27726g0010 No alias (at1g15510 : 744.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
MA_28051g0010 No alias (at1g11290 : 601.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
MA_2991g0010 No alias (at2g27610 : 718.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_322292g0010 No alias (at4g18750 : 684.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
MA_32723g0010 No alias (at2g13600 : 442.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
MA_3471g0010 No alias (at4g13650 : 601.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_36655g0010 No alias (at4g39530 : 586.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
MA_381817g0020 No alias (at2g22070 : 544.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
MA_38266g0010 No alias (at3g12770 : 649.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
MA_442926g0010 No alias (at4g13650 : 697.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_502206g0010 No alias (at1g20230 : 427.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_57048g0010 No alias (at3g09040 : 636.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
MA_59148g0010 No alias (at1g11290 : 604.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
MA_63139g0020 No alias (at4g13650 : 686.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_656915g0010 No alias (at4g18750 : 657.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
MA_66417g0010 No alias (at2g22070 : 634.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
MA_68084g0010 No alias (at1g11290 : 535.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
MA_771696g0010 No alias (at1g20230 : 490.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
MA_77675g0010 No alias (at4g13650 : 598.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_80970g0010 No alias (at1g11290 : 615.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
MA_87646g0010 No alias (at3g02330 : 723.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_89214g0010 No alias (at1g11290 : 690.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
MA_921g0010 No alias (at3g12770 : 484.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
MA_9258g0010 No alias (at4g13650 : 664.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_9354530g0010 No alias (at1g11290 : 613.0) Pentatricopeptide Repeat Protein... 0.05 Orthogroups_2024-Update
MA_95261g0010 No alias (at1g11290 : 556.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00003874-RA No alias (at4g33170 : 590.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00013800-RA No alias (at2g03880 : 405.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
Potri.003G164900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.004G059400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Solyc09g010070 No alias Pentatricopeptide repeat superfamily protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc11g005960 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen03g011150 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen04g026190 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen07g026910 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen10g003810 No alias PPR repeat 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004629 phospholipase C activity IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 679 803
IPR002885 Pentatricopeptide_repeat 505 552
IPR002885 Pentatricopeptide_repeat 304 348
IPR002885 Pentatricopeptide_repeat 405 451
IPR002885 Pentatricopeptide_repeat 203 246
IPR002885 Pentatricopeptide_repeat 102 148
No external refs found!