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  5. Bradi1g02570

Bradi1g02570


Description : RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain


Gene families : OG_42_0000107 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g02570
Cluster HCCA clusters: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
140819 No alias glycine-rich RNA-binding protein 4 0.02 Orthogroups_2024-Update
81392 No alias glycine-rich RNA-binding protein 3 0.03 Orthogroups_2024-Update
A4A49_14417 No alias glycine-rich rna-binding protein 7 0.04 Orthogroups_2024-Update
A4A49_27721 No alias glycine-rich rna-binding protein 0.06 Orthogroups_2024-Update
A4A49_55770 No alias glycine-rich rna-binding protein 0.03 Orthogroups_2024-Update
A4A49_62682 No alias glycine-rich rna-binding protein 0.07 Orthogroups_2024-Update
Brara.D01278.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I04624.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.K01454.1 No alias Unknown function 0.04 Orthogroups_2024-Update
GRMZM2G003897 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
Glyma.04G012700 No alias cold, circadian rhythm, and rna binding 2 0.03 Orthogroups_2024-Update
Glyma.11G117300 No alias cold, circadian rhythm, and rna binding 2 0.03 Orthogroups_2024-Update
Glyma.11G117400 No alias cold, circadian rhythm, and rna binding 2 0.02 Orthogroups_2024-Update
HORVU3Hr1G092880.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU3Hr1G093400.1 No alias RNA editing factor *(ORRM3) 0.04 Orthogroups_2024-Update
HORVU4Hr1G059000.3 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU5Hr1G002150.1 No alias Unknown function 0.05 Orthogroups_2024-Update
HORVU5Hr1G110370.1 No alias RNA editing factor *(ORRM3) 0.02 Orthogroups_2024-Update
HORVU5Hr1G118010.1 No alias Unknown function 0.06 Orthogroups_2024-Update
LOC_Os01g68790 No alias RNA recognition motif containing protein, putative, expressed 0.06 Orthogroups_2024-Update
LOC_Os03g61990 No alias glycine-rich RNA-binding protein 7, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os10g17454 No alias RNA recognition motif containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g31800 No alias glycine-rich RNA-binding protein 7, putative, expressed 0.04 Orthogroups_2024-Update
Potri.004G155300 No alias cold, circadian rhythm, and RNA binding 1 0.04 Orthogroups_2024-Update
Potri.008G033000 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.02 Orthogroups_2024-Update
Potri.009G116400 No alias cold, circadian rhythm, and RNA binding 1 0.04 Orthogroups_2024-Update
Pp1s42_251V6 No alias glycine-rich rna-binding protein 2 0.02 Orthogroups_2024-Update
Seita.2G062600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.5G427300.1 No alias RNA editing factor *(ORRM3) 0.03 Orthogroups_2024-Update
Seita.9G021300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G022600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.003G401400.1 No alias RNA editing factor *(ORRM3) 0.03 Orthogroups_2024-Update
Solyc01g109660 No alias meloidogyne-induced giant cell protein DB275 0.03 Orthogroups_2024-Update
Sopen01g051850 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.03 Orthogroups_2024-Update
Sopen02g016120 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.04 Orthogroups_2024-Update
Sopen02g033510 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.04 Orthogroups_2024-Update
Sopen05g032250 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.02 Orthogroups_2024-Update
Sopen07g024600 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.02 Orthogroups_2024-Update
Sopen10g023080 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004197 cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
BP GO:0042255 ribosome assembly IEP Predicted GO
BP GO:0042256 mature ribosome assembly IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0050661 NADP binding IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 127 141
IPR000504 RRM_dom 10 78
No external refs found!