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  5. Bradi1g05660

Bradi1g05660


Description : exoribonuclease 4


Gene families : OG_42_0000619 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000619_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g05660
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Cre06.g280050 No alias exoribonuclease 4 0.01 Orthogroups_2024-Update
Cre08.g373916 No alias exoribonuclease 2 0.02 Orthogroups_2024-Update
Cre16.g679900 No alias 5\'-3\' exoribonuclease 3 0.02 Orthogroups_2024-Update
GRMZM2G099630 No alias exoribonuclease 4 0.04 Orthogroups_2024-Update
HORVU3Hr1G082310.12 No alias exoribonuclease *(RAT1/XRN2) 0.03 Orthogroups_2024-Update
HORVU5Hr1G082940.4 No alias Unknown function 0.03 Orthogroups_2024-Update
Mp3g08820.1 No alias exoribonuclease (RAT1/XRN2) 0.03 Orthogroups_2024-Update
PSME_00004038-RA No alias (at1g75660 : 1056.0) Encodes a protein with similarity... 0.03 Orthogroups_2024-Update
Sobic.001G058700.1 No alias exoribonuclease *(XRN4) 0.04 Orthogroups_2024-Update
Sobic.003G119000.1 No alias exoribonuclease *(RAT1/XRN2) 0.05 Orthogroups_2024-Update
evm.model.contig_2341.1 No alias (at1g75660 : 358.0) Encodes a protein with similarity to... 0.02 Orthogroups_2024-Update
evm.model.contig_527.3 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004527 exonuclease activity IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0004402 histone acetyltransferase activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006473 protein acetylation IEP Predicted GO
BP GO:0006475 internal protein amino acid acetylation IEP Predicted GO
MF GO:0008080 N-acetyltransferase activity IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016410 N-acyltransferase activity IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016573 histone acetylation IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0018393 internal peptidyl-lysine acetylation IEP Predicted GO
BP GO:0018394 peptidyl-lysine acetylation IEP Predicted GO
MF GO:0032947 protein-containing complex scaffold activity IEP Predicted GO
MF GO:0034212 peptide N-acetyltransferase activity IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
BP GO:0043543 protein acylation IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 264 278
IPR004859 Put_53exo 1 254
No external refs found!