Bradi1g12550

Description : thiaminC

Gene families : OG_42_0006147 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006147_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium release: Bradi1g12550
Cluster	HCCA clusters: Cluster_76

Target	Alias	Description	ECC score	Gene Family Method
120890	No alias	thiaminC	0.05	Orthogroups_2024-Update
152730	No alias	thiaminC	0.04	Orthogroups_2024-Update
A4A49_38490	No alias	phosphomethylpyrimidine synthase, chloroplastic	0.03	Orthogroups_2024-Update
At2g29630	No alias	Phosphomethylpyrimidine synthase, chloroplastic...	0.03	Orthogroups_2024-Update
Glyma.11G176200	No alias	thiaminC	0.03	Orthogroups_2024-Update
Glyma.18G065700	No alias	thiaminC	0.02	Orthogroups_2024-Update
HORVU4Hr1G003580.22	No alias	hydroxymethylpyrimidine phosphate synthase *(ThiC)	0.05	Orthogroups_2024-Update
Kfl00330_0080	kfl00330_0080_v1.1	(at2g29630 : 957.0) thiaminC (THIC); CONTAINS InterPro...	0.02	Orthogroups_2024-Update
LOC_Os03g47610	No alias	thiamine biosynthesis protein thiC, putative, expressed	0.06	Orthogroups_2024-Update
Potri.001G249200	No alias	thiaminC	0.05	Orthogroups_2024-Update
Potri.009G043200	No alias	thiaminC	0.05	Orthogroups_2024-Update
Pp1s402_42V6	No alias	thiamin biosynthesis protein	0.04	Orthogroups_2024-Update
Seita.9G140100.1	No alias	hydroxymethylpyrimidine phosphate synthase *(ThiC)	0.06	Orthogroups_2024-Update
Sobic.001G138000.1	No alias	hydroxymethylpyrimidine phosphate synthase *(ThiC)	0.04	Orthogroups_2024-Update
Sopen06g002030	No alias	ThiC family	0.03	Orthogroups_2024-Update
evm.model.tig00000144.83	No alias	(at2g29630 : 782.0) thiaminC (THIC); CONTAINS InterPro...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006766	vitamin metabolic process	None	Extended
BP	GO:0006767	water-soluble vitamin metabolic process	None	Extended
BP	GO:0006772	thiamine metabolic process	None	Extended
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009110	vitamin biosynthetic process	None	Extended
BP	GO:0009228	thiamine biosynthetic process	IEA	InterProScan predictions
BP	GO:0009987	cellular process	None	Extended
BP	GO:0017144	drug metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042364	water-soluble vitamin biosynthetic process	None	Extended
BP	GO:0042723	thiamine-containing compound metabolic process	None	Extended
BP	GO:0042724	thiamine-containing compound biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044272	sulfur compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0048037	cofactor binding	None	Extended
MF	GO:0051536	iron-sulfur cluster binding	IEA	InterProScan predictions
MF	GO:0051540	metal cluster binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072527	pyrimidine-containing compound metabolic process	None	Extended
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003916	DNA topoisomerase activity	IEP	Predicted GO
MF	GO:0004347	glucose-6-phosphate isomerase activity	IEP	Predicted GO
MF	GO:0004645	phosphorylase activity	IEP	Predicted GO
CC	GO:0005694	chromosome	IEP	Predicted GO
BP	GO:0006006	glucose metabolic process	IEP	Predicted GO
BP	GO:0006094	gluconeogenesis	IEP	Predicted GO
BP	GO:0006265	DNA topological change	IEP	Predicted GO
MF	GO:0008184	glycogen phosphorylase activity	IEP	Predicted GO
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Predicted GO
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	Predicted GO
BP	GO:0017004	cytochrome complex assembly	IEP	Predicted GO
BP	GO:0019319	hexose biosynthetic process	IEP	Predicted GO
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Predicted GO
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Predicted GO
BP	GO:0046364	monosaccharide biosynthetic process	IEP	Predicted GO
BP	GO:0071103	DNA conformation change	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002817	ThiC/BzaA/B	165	585

External Links

No external refs found!

Bradi1g12550

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation