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  5. Bradi1g13980

Bradi1g13980


Description : phytochrome interacting factor 3-like 5


Gene families : OG_42_0000449 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000449_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g13980
Cluster HCCA clusters: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
118904 No alias phytochrome interacting factor 3 0.03 Orthogroups_2024-Update
A4A49_38454 No alias transcription factor pif5 0.03 Orthogroups_2024-Update
At2g20180 No alias Transcription factor PIF1... 0.02 Orthogroups_2024-Update
At2g43010 No alias phytochrome interacting factor 4 [Source:TAIR;Acc:AT2G43010] 0.03 Orthogroups_2024-Update
At3g59060 No alias Transcription factor PIF5... 0.03 Orthogroups_2024-Update
Brara.C02178.1 No alias regulatory protein *(PIF) of red/far-red light... 0.03 Orthogroups_2024-Update
Brara.D02603.1 No alias regulatory protein *(PIF) of red/far-red light... 0.04 Orthogroups_2024-Update
Brara.I04061.1 No alias regulatory protein *(PIF) of red/far-red light... 0.03 Orthogroups_2024-Update
GRMZM2G042920 No alias phytochrome interacting factor 3 0.02 Orthogroups_2024-Update
Glyma.18G115700 No alias phytochrome interacting factor 4 0.03 Orthogroups_2024-Update
HORVU2Hr1G060680.1 No alias regulatory protein *(PIF) of red/far-red light... 0.04 Orthogroups_2024-Update
LOC_Os03g43810 No alias helix-loop-helix DNA-binding domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os03g56950 No alias phytochrome-interacting factor 4, putative, expressed 0.03 Orthogroups_2024-Update
Pp1s147_126V6 No alias helix-loop-helix dna-binding domain containing expressed 0.03 Orthogroups_2024-Update
Pp1s69_37V6 No alias dna binding 0.02 Orthogroups_2024-Update
Sobic.001G068301.1 No alias bHLH-type transcription factor 0.05 Orthogroups_2024-Update
Solyc07g043580 No alias bHLH transcription factor 052 0.03 Orthogroups_2024-Update
Solyc09g063010 No alias bHLH transcription factor 058 0.04 Orthogroups_2024-Update
Sopen09g025180 No alias Helix-loop-helix DNA-binding domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
BP GO:0042126 nitrate metabolic process IEP Predicted GO
BP GO:0042128 nitrate assimilation IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0071941 nitrogen cycle metabolic process IEP Predicted GO
BP GO:2001057 reactive nitrogen species metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 281 327
No external refs found!