Solyc02g071730

Description : Tomato AGAMOUS 1

Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc02g071730
Cluster	HCCA clusters: Cluster_112

Target	Alias	Description	ECC score	Gene Family Method
A4A49_26362	No alias	floral homeotic protein globosa	0.02	Orthogroups_2024-Update
At4g22950	No alias	Agamous-like MADS-box protein AGL19...	0.02	Orthogroups_2024-Update
At5g51860	No alias	MADS-box protein AGL72 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLH5]	0.03	Orthogroups_2024-Update
Brara.D02091.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Brara.E00310.1	No alias	MADS/AGL-type transcription factor	0.04	Orthogroups_2024-Update
GRMZM2G003514	No alias	AGAMOUS-like 6	0.04	Orthogroups_2024-Update
GRMZM2G018589	No alias	K-box region and MADS-box transcription factor family protein	0.02	Orthogroups_2024-Update
Glyma.03G019300	No alias	AGAMOUS-like 20	0.04	Orthogroups_2024-Update
Glyma.05G163200	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
LOC_Os01g10504	No alias	OsMADS3 - MADS-box family gene with MIKCc type-box, expressed	0.03	Orthogroups_2024-Update
LOC_Os08g41950	No alias	OsMADS7 - MADS-box family gene with MIKCc type-box, expressed	0.03	Orthogroups_2024-Update
Potri.007G087500	No alias	AGAMOUS-like 66	0.02	Orthogroups_2024-Update
Potri.009G084200	No alias	AGAMOUS-like 62	0.02	Orthogroups_2024-Update
Pp1s209_130V6	No alias	mads-box transcription factor	0.03	Orthogroups_2024-Update
Seita.2G002300.1	No alias	regulatory protein *(AP1/CAL/FUL) of floral meristem...	0.03	Orthogroups_2024-Update
Seita.6G223700.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.001G314400.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Sopen01g045900	No alias	SRF-type transcription factor (DNA-binding and...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	InterProScan predictions
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Predicted GO
MF	GO:0003857	3-hydroxyacyl-CoA dehydrogenase activity	IEP	Predicted GO
MF	GO:0004673	protein histidine kinase activity	IEP	Predicted GO
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Predicted GO
BP	GO:0006497	protein lipidation	IEP	Predicted GO
BP	GO:0006505	GPI anchor metabolic process	IEP	Predicted GO
BP	GO:0006506	GPI anchor biosynthetic process	IEP	Predicted GO
BP	GO:0006629	lipid metabolic process	IEP	Predicted GO
BP	GO:0006643	membrane lipid metabolic process	IEP	Predicted GO
BP	GO:0006650	glycerophospholipid metabolic process	IEP	Predicted GO
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	Predicted GO
BP	GO:0006664	glycolipid metabolic process	IEP	Predicted GO
BP	GO:0007165	signal transduction	IEP	Predicted GO
BP	GO:0008654	phospholipid biosynthetic process	IEP	Predicted GO
BP	GO:0009247	glycolipid biosynthetic process	IEP	Predicted GO
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Predicted GO
BP	GO:0035556	intracellular signal transduction	IEP	Predicted GO
BP	GO:0044255	cellular lipid metabolic process	IEP	Predicted GO
CC	GO:0044432	endoplasmic reticulum part	IEP	Predicted GO
BP	GO:0045017	glycerolipid biosynthetic process	IEP	Predicted GO
BP	GO:0046467	membrane lipid biosynthetic process	IEP	Predicted GO
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	Predicted GO
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	Predicted GO
BP	GO:1903509	liposaccharide metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	101	187
IPR002100	TF_MADSbox	26	73

External Links

No external refs found!

Solyc02g071730

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation