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  5. Bradi1g18930

Bradi1g18930


Description : DEA(D/H)-box RNA helicase family protein


Gene families : OG_42_0001960 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001960_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g18930
Cluster HCCA clusters: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
At1g16280 No alias DEAD-box ATP-dependent RNA helicase 36... 0.03 Orthogroups_2024-Update
At5g60990 No alias DEAD-box ATP-dependent RNA helicase 10... 0.05 Orthogroups_2024-Update
Brara.C04220.1 No alias Unknown function 0.09 Orthogroups_2024-Update
Brara.I04886.1 No alias SSU processome assembly factor *(SWA3) 0.02 Orthogroups_2024-Update
Cre12.g505200 No alias DEA(D/H)-box RNA helicase family protein 0.09 Orthogroups_2024-Update
Cre16.g683500 No alias RNA helicase 36 0.02 Orthogroups_2024-Update
GRMZM2G075027 No alias DEA(D/H)-box RNA helicase family protein 0.05 Orthogroups_2024-Update
HORVU2Hr1G022490.1 No alias Unknown function 0.05 Orthogroups_2024-Update
LOC_Os03g46610 No alias DEAD-box ATP-dependent RNA helicase, putative, expressed 0.05 Orthogroups_2024-Update
Potri.007G068800 No alias DEA(D/H)-box RNA helicase family protein 0.03 Orthogroups_2024-Update
Seita.6G237900.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.002G387500.1 No alias SSU processome assembly factor *(SWA3) 0.06 Orthogroups_2024-Update
Solyc10g007550 No alias RNA helicase DEAD31 0.07 Orthogroups_2024-Update
Sopen10g003480 No alias DEAD/DEAH box helicase 0.03 Orthogroups_2024-Update
evm.model.tig00020848.20 No alias (at5g60990 : 445.0) DEA(D/H)-box RNA helicase family... 0.03 Orthogroups_2024-Update
evm.model.tig00021122.18 No alias (at1g16280 : 275.0) RNA helicase 36 (RH36); FUNCTIONS... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016778 diphosphotransferase activity IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 42 209
IPR001650 Helicase_C 247 352
No external refs found!