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  5. Bradi1g19627

Bradi1g19627


Description : SAC3/GANP/Nin1/mts3/eIF-3 p25 family


Gene families : OG_42_0002266 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002266_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g19627
Cluster HCCA clusters: Cluster_225

Target Alias Description ECC score Gene Family Method Actions
At3g06290 No alias SAC3 family protein B [Source:UniProtKB/Swiss-Prot;Acc:F4JAU2] 0.03 Orthogroups_2024-Update
Cre02.g143600 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.01 Orthogroups_2024-Update
Glyma.13G211900 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.06 Orthogroups_2024-Update
Glyma.15G100800 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.03 Orthogroups_2024-Update
HORVU2Hr1G025040.28 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.05 Orthogroups_2024-Update
Mp1g09900.1 No alias scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.03 Orthogroups_2024-Update
Seita.2G412700.1 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.09 Orthogroups_2024-Update
Sobic.002G397500.2 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.07 Orthogroups_2024-Update
Sopen12g016080 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.02 Orthogroups_2024-Update
evm.model.tig00001278.20 No alias (at3g54380 : 83.6) SAC3/GANP/Nin1/mts3/eIF-3 p25 family;... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
InterPro domains Description Start Stop
IPR005062 SAC3/GANP/THP3 562 858
No external refs found!