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  5. Bradi1g30580

Bradi1g30580


Description : transducin family protein / WD-40 repeat family protein


Gene families : OG_42_0007155 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007155_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g30580
Cluster HCCA clusters: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
78691 No alias transducin family protein / WD-40 repeat family protein 0.04 Orthogroups_2024-Update
At4g04940 No alias Putative WD-repeat membrane protein... 0.09 Orthogroups_2024-Update
Brara.C02742.1 No alias SSU processome assembly factor *(UTP21) 0.13 Orthogroups_2024-Update
Cre10.g466250 No alias transducin family protein / WD-40 repeat family protein 0.13 Orthogroups_2024-Update
Glyma.01G001600 No alias transducin family protein / WD-40 repeat family protein 0.04 Orthogroups_2024-Update
Glyma.08G359600 No alias transducin family protein / WD-40 repeat family protein 0.03 Orthogroups_2024-Update
HORVU7Hr1G115460.4 No alias SSU processome assembly factor *(UTP21) 0.03 Orthogroups_2024-Update
LOC_Os06g43690 No alias WD repeat-containing protein, putative, expressed 0.03 Orthogroups_2024-Update
Mp3g13780.1 No alias SSU processome assembly factor (UTP21) 0.02 Orthogroups_2024-Update
Potri.006G078900 No alias transducin family protein / WD-40 repeat family protein 0.08 Orthogroups_2024-Update
Potri.018G148066 No alias transducin family protein / WD-40 repeat family protein 0.02 Orthogroups_2024-Update
Pp1s207_37V6 No alias mgc53182 protein 0.09 Orthogroups_2024-Update
Seita.4G201000.1 No alias SSU processome assembly factor *(UTP21) 0.16 Orthogroups_2024-Update
Sobic.010G205900.1 No alias SSU processome assembly factor *(UTP21) 0.23 Orthogroups_2024-Update
Solyc01g087670 No alias Transducin/WD40 repeat protein (AHRD V3.3 *** A0A072UCU5_MEDTR) 0.07 Orthogroups_2024-Update
Sopen01g034630 No alias Utp21 specific WD40 associated putative domain 0.11 Orthogroups_2024-Update
evm.model.contig_493.12 No alias (at4g04940 : 260.0) transducin family protein / WD-40... 0.04 Orthogroups_2024-Update
evm.model.tig00021348.51 No alias (at4g04940 : 484.0) transducin family protein / WD-40... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
BP GO:0006364 rRNA processing IEA InterProScan predictions
CC GO:0032040 small-subunit processome IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006188 IMP biosynthetic process IEP Predicted GO
BP GO:0006189 'de novo' IMP biosynthetic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009117 nucleotide metabolic process IEP Predicted GO
BP GO:0009165 nucleotide biosynthetic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016778 diphosphotransferase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
CC GO:0030677 ribonuclease P complex IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0046040 IMP metabolic process IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1902555 endoribonuclease complex IEP Predicted GO
CC GO:1905348 endonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007319 SSU_processome_Utp21 683 900
IPR001680 WD40_repeat 266 296
IPR001680 WD40_repeat 309 342
IPR001680 WD40_repeat 550 586
No external refs found!