Bradi1g33160

Description : auxin response factor 16

Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium release: Bradi1g33160
Cluster	HCCA clusters: Cluster_173

Target	Alias	Description	ECC score	Gene Family Method
437944	No alias	auxin response factor 2	0.02	Orthogroups_2024-Update
A4A49_18150	No alias	auxin response factor 8	0.03	Orthogroups_2024-Update
A4A49_21432	No alias	auxin response factor 10	0.03	Orthogroups_2024-Update
AC207656.3_FG002	No alias	auxin response factor 16	0.02	Orthogroups_2024-Update
At1g59750	No alias	Auxin response factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7G0]	0.03	Orthogroups_2024-Update
At3g61830	No alias	Auxin response factor 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5W9]	0.03	Orthogroups_2024-Update
At5g20730	No alias	Transcriptional factor B3 family protein /...	0.02	Orthogroups_2024-Update
Bradi3g03407	No alias	Transcriptional factor B3 family protein /...	0.01	Orthogroups_2024-Update
Bradi5g15904	No alias	auxin response factor 10	0.03	Orthogroups_2024-Update
Bradi5g25157	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Brara.B03784.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.K00855.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
GRMZM2G338259	No alias	auxin response factor 2	0.03	Orthogroups_2024-Update
GRMZM2G475263	No alias	auxin response factor 11	0.03	Orthogroups_2024-Update
Glyma.15G078800	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
LOC_Os11g32110	No alias	auxin response factor, putative, expressed	0.02	Orthogroups_2024-Update
Mp1g07070.1	No alias	transcription factor (ARF)	0.02	Orthogroups_2024-Update
PSME_00023239-RA	No alias	(at1g30330 : 665.0) Encodes a member of the auxin...	0.02	Orthogroups_2024-Update
Potri.003G142100	No alias	auxin response factor 9	0.02	Orthogroups_2024-Update
Pp1s48_147V6	No alias	auxin response	0.02	Orthogroups_2024-Update
Sobic.002G290600.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Solyc07g016180	No alias	Auxin Response Factor 7A	0.03	Orthogroups_2024-Update
Sopen01g039790	No alias	AUX/IAA family	0.02	Orthogroups_2024-Update
Sopen07g023180	No alias	Auxin response factor	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	InterProScan predictions
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000062	fatty-acyl-CoA binding	IEP	Predicted GO
MF	GO:0005506	iron ion binding	IEP	Predicted GO
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Predicted GO
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Predicted GO
MF	GO:0033218	amide binding	IEP	Predicted GO
MF	GO:0046914	transition metal ion binding	IEP	Predicted GO
MF	GO:0048037	cofactor binding	IEP	Predicted GO
MF	GO:1901567	fatty acid derivative binding	IEP	Predicted GO
MF	GO:1901681	sulfur compound binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR010525	Auxin_resp	299	382
IPR003340	B3_DNA-bd	136	237

External Links

No external refs found!

Bradi1g33160

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation