Sopen06g024190

Description : ABC-2 type transporter

Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen06g024190
Cluster	HCCA clusters: Cluster_118

Target	Alias	Description	ECC score	Gene Family Method
Cre04.g224500	No alias	pleiotropic drug resistance 3	0.02	Orthogroups_2024-Update
Cre16.g648700	No alias	pleiotropic drug resistance 5	0.02	Orthogroups_2024-Update
Glyma.05G011900	No alias	pleiotropic drug resistance 4	0.03	Orthogroups_2024-Update
Glyma.17G120100	No alias	pleiotropic drug resistance 4	0.03	Orthogroups_2024-Update
Kfl00056_0220	kfl00056_0220_v1.1	(q7pc80\|pdr1_orysa : 1395.0) Probable pleiotropic drug...	0.01	Orthogroups_2024-Update
MA_105476g0010	No alias	(q2pcf1\|pdr2_nicpl : 1910.0) Pleiotropic drug resistance...	0.02	Orthogroups_2024-Update
PSME_00000647-RA	No alias	(at1g59870 : 1668.0) ATP binding cassette transporter....	0.02	Orthogroups_2024-Update
PSME_00001268-RA	No alias	(at1g59870 : 1834.0) ATP binding cassette transporter....	0.02	Orthogroups_2024-Update
Sobic.001G190900.1	No alias	subfamily ABCG transporter	0.02	Orthogroups_2024-Update
Sobic.003G216300.1	No alias	subfamily ABCG transporter	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0008144	drug binding	None	Extended
CC	GO:0016020	membrane	IEA	InterProScan predictions
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like	835	986
IPR029481	ABC_trans_N	68	117
IPR013581	PDR_assoc	693	755
IPR003439	ABC_transporter-like	142	323
IPR013525	ABC_2_trans	1132	1344
IPR013525	ABC_2_trans	477	688

External Links

No external refs found!