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  5. Sopen06g024260

Sopen06g024260


Description : SNF2 family N-terminal domain


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g024260
Cluster HCCA clusters: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
Brara.I04444.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.04 Orthogroups_2024-Update
Kfl00142_0080 kfl00142_0080_v1.... (q7g8y3|isw2_orysa : 220.0) Probable chromatin... 0.02 Orthogroups_2024-Update
Potri.006G262200 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Orthogroups_2024-Update
Pp1s166_101V6 No alias chromodomain helicase dna binding protein 6 0.02 Orthogroups_2024-Update
Pp1s360_39V6 No alias syd atpase chromatin binding 0.02 Orthogroups_2024-Update
Solyc02g085390 No alias chromatin remodeling 1 (AHRD V3.3 *** AT5G66750.1) 0.03 Orthogroups_2024-Update
Solyc12g099910 No alias chromatin remodeling 5 (AHRD V3.3 *** AT2G13370.3) 0.03 Orthogroups_2024-Update
evm.model.contig_4438.19 No alias (at3g06010 : 317.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 52 94
IPR009463 DUF1087 850 902
IPR001650 Helicase_C 606 719
IPR023780 Chromo_domain 100 154
IPR023780 Chromo_domain 191 239
IPR000330 SNF2_N 306 584
IPR009462 DUF1086 935 1065
No external refs found!