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  5. Bradi1g61240

Bradi1g61240


Description : RNA-binding KH domain-containing protein


Gene families : OG_42_0000643 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000643_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g61240
Cluster HCCA clusters: Cluster_212

Target Alias Description ECC score Gene Family Method Actions
A4A49_34531 No alias kh domain-containing protein hen4 0.04 Orthogroups_2024-Update
At5g15270 No alias RNA-binding KH domain-containing protein... 0.02 Orthogroups_2024-Update
Brara.F02318.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.01G021400 No alias RNA-binding KH domain-containing protein 0.04 Orthogroups_2024-Update
Glyma.09G235900 No alias RNA-binding KH domain-containing protein 0.03 Orthogroups_2024-Update
Glyma.18G261100 No alias RNA-binding KH domain-containing protein 0.03 Orthogroups_2024-Update
PSME_00004511-RA No alias (at5g15270 : 293.0) RNA-binding KH domain-containing... 0.02 Orthogroups_2024-Update
Potri.004G123400 No alias RNA-binding KH domain-containing protein 0.03 Orthogroups_2024-Update
Seita.9G207200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G385500.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G207000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sopen04g030710 No alias KH domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003756 protein disulfide isomerase activity IEP Predicted GO
MF GO:0004484 mRNA guanylyltransferase activity IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006354 DNA-templated transcription, elongation IEP Predicted GO
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006370 7-methylguanosine mRNA capping IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008192 RNA guanylyltransferase activity IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0009452 7-methylguanosine RNA capping IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
CC GO:0016593 Cdc73/Paf1 complex IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016864 intramolecular oxidoreductase activity, transposing S-S bonds IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
MF GO:0031491 nucleosome binding IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0036260 RNA capping IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
BP GO:0043044 ATP-dependent chromatin remodeling IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
MF GO:0070568 guanylyltransferase activity IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 284 332
IPR004088 KH_dom_type_1 45 97
IPR004088 KH_dom_type_1 368 435
IPR004088 KH_dom_type_1 141 208
No external refs found!