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Bradi1g62350


Description : RING-H2 finger C1A


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g62350
Cluster HCCA clusters: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
A4A49_25008 No alias e3 ubiquitin-protein ligase cip8 0.02 Orthogroups_2024-Update
At5g64920 No alias CIP8 [Source:UniProtKB/TrEMBL;Acc:A0A178UJC6] 0.03 Orthogroups_2024-Update
Brara.G01814.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G080320.4 No alias Unknown function 0.03 Orthogroups_2024-Update
Potri.012G036700 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Seita.8G028200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen01g004490 No alias Ring finger domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0004650 polygalacturonase activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR039525 RNF126-like_zinc-ribbon 6 37
IPR001841 Znf_RING 186 228
No external refs found!