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  5. Bradi1g62430

Bradi1g62430


Description : NOP56-like pre RNA processing ribonucleoprotein


Gene families : OG_42_0003373 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003373_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g62430
Cluster HCCA clusters: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
146841 No alias NOP56-like pre RNA processing ribonucleoprotein 0.03 Orthogroups_2024-Update
A4A49_01090 No alias putative nucleolar protein 5-2 0.03 Orthogroups_2024-Update
At3g05060 No alias Probable nucleolar protein 5-2... 0.04 Orthogroups_2024-Update
Brara.F02881.1 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.1 Orthogroups_2024-Update
Brara.I00439.1 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.09 Orthogroups_2024-Update
Cre10.g441400 No alias NOP56-like pre RNA processing ribonucleoprotein 0.09 Orthogroups_2024-Update
GRMZM2G124576 No alias NOP56-like pre RNA processing ribonucleoprotein 0.09 Orthogroups_2024-Update
GRMZM2G125148 No alias NOP56-like pre RNA processing ribonucleoprotein 0.1 Orthogroups_2024-Update
Glyma.11G114300 No alias NOP56-like pre RNA processing ribonucleoprotein 0.06 Orthogroups_2024-Update
Glyma.12G040200 No alias NOP56-like pre RNA processing ribonucleoprotein 0.07 Orthogroups_2024-Update
HORVU2Hr1G020690.6 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.13 Orthogroups_2024-Update
Potri.005G045600 No alias NOP56-like pre RNA processing ribonucleoprotein 0.02 Orthogroups_2024-Update
Pp1s11_243V6 No alias nucleolar protein expressed 0.05 Orthogroups_2024-Update
Pp1s22_229V6 No alias nucleolar protein expressed 0.07 Orthogroups_2024-Update
Seita.9G404600.1 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.15 Orthogroups_2024-Update
Seita.9G404700.1 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.08 Orthogroups_2024-Update
Sobic.001G372800.1 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.13 Orthogroups_2024-Update
Sobic.003G407800.1 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.06 Orthogroups_2024-Update
Solyc05g055880 No alias NOP56-like pre RNA processing ribonucleoprotein (AHRD... 0.04 Orthogroups_2024-Update
Solyc09g083080 No alias MAR-binding protein 0.12 Orthogroups_2024-Update
Sopen09g031960 No alias Putative snoRNA binding domain 0.1 Orthogroups_2024-Update
evm.model.contig_496.10 No alias (at5g27120 : 425.0) SAR DNA-binding protein, putative,... 0.03 Orthogroups_2024-Update
evm.model.tig00021350.31 No alias (at3g05060 : 530.0) SAR DNA-binding protein, putative,... 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005666 RNA polymerase III complex IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006144 purine nucleobase metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006383 transcription by RNA polymerase III IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0009112 nucleobase metabolic process IEP Predicted GO
BP GO:0009113 purine nucleobase biosynthetic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
BP GO:0046112 nucleobase biosynthetic process IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002687 Nop_dom 166 395
IPR012974 NOP5_N 2 65
No external refs found!