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  5. Bradi1g64190

Bradi1g64190


Description : RNA helicase family protein


Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g64190
Cluster HCCA clusters: Cluster_225

Target Alias Description ECC score Gene Family Method Actions
82212 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
At1g32490 No alias ESP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3A5] 0.04 Orthogroups_2024-Update
At2g35340 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Orthogroups_2024-Update
Brara.B00468.1 No alias RNA helicase *(Prp16) 0.02 Orthogroups_2024-Update
Cre03.g182950 No alias RNA helicase family protein 0.01 Orthogroups_2024-Update
Cre07.g349100 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Cre24.g755347 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
GRMZM2G000371 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Glyma.01G142700 No alias RNA helicase family protein 0.05 Orthogroups_2024-Update
Glyma.06G201700 No alias RNA helicase family protein 0.05 Orthogroups_2024-Update
Glyma.13G342400 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Glyma.14G217400 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Glyma.15G031900 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Glyma.17G256200 No alias ATP-dependent RNA helicase, putative 0.05 Orthogroups_2024-Update
HORVU4Hr1G052730.3 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex 0.03 Orthogroups_2024-Update
Kfl00020_0480 kfl00020_0480_v1.1 (at3g26560 : 1414.0) ATP-dependent RNA helicase,... 0.03 Orthogroups_2024-Update
LOC_Os08g24760 No alias ATP-dependent RNA helicase, putative, expressed 0.03 Orthogroups_2024-Update
MA_629782g0010 No alias (at5g13010 : 617.0) embryo defective 3011 (EMB3011);... 0.05 Orthogroups_2024-Update
Mp2g13680.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Orthogroups_2024-Update
Mp7g03460.1 No alias RNA helicase (Prp16) 0.01 Orthogroups_2024-Update
PSME_00016394-RA No alias (at3g26560 : 1512.0) ATP-dependent RNA helicase,... 0.05 Orthogroups_2024-Update
Potri.010G057200 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Potri.015G008700 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Seita.1G136100.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.2G326100.1 No alias RNA helicase *(Prp16) 0.04 Orthogroups_2024-Update
Seita.3G152600.1 No alias RNA helicase *(Prp2) 0.02 Orthogroups_2024-Update
Seita.4G158300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.8G109400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.002G313400.1 No alias RNA helicase *(Prp16) 0.02 Orthogroups_2024-Update
Solyc01g095710 No alias RNA helicase DEAH-box3 0.03 Orthogroups_2024-Update
Sopen01g053030 No alias Oligonucleotide/oligosaccharide-binding (OB)-fold 0.02 Orthogroups_2024-Update
evm.model.tig00000984.27 No alias (at1g32490 : 711.0) Encodes a homolog of the yeast PRP2... 0.01 Orthogroups_2024-Update
evm.model.tig00021589.29 No alias (at3g26560 : 868.0) ATP-dependent RNA helicase,... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005777 peroxisome IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
BP GO:0006904 vesicle docking involved in exocytosis IEP Predicted GO
BP GO:0007031 peroxisome organization IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0009119 ribonucleoside metabolic process IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030118 clathrin coat IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030125 clathrin vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
CC GO:0030132 clathrin coat of coated pit IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
BP GO:0032324 molybdopterin cofactor biosynthetic process IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0042278 purine nucleoside metabolic process IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043545 molybdopterin cofactor metabolic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046039 GTP metabolic process IEP Predicted GO
BP GO:0046128 purine ribonucleoside metabolic process IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051189 prosthetic group metabolic process IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
BP GO:0140029 exocytic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
BP GO:1901068 guanosine-containing compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR011709 DUF1605 612 688
IPR003593 AAA+_ATPase 78 214
IPR001650 Helicase_C 266 399
IPR007502 Helicase-assoc_dom 462 550
No external refs found!