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  5. Bradi1g70057

Bradi1g70057


Description : U5 small nuclear ribonucleoprotein helicase


Gene families : OG_42_0000868 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000868_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g70057
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
410613 No alias U5 small nuclear ribonucleoprotein helicase 0.02 Orthogroups_2024-Update
A4A49_16477 No alias dexh-box atp-dependent rna helicase dexh12 0.02 Orthogroups_2024-Update
At1g20960 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.03 Orthogroups_2024-Update
At2g42270 No alias DExH-box ATP-dependent RNA helicase DExH13... 0.04 Orthogroups_2024-Update
Glyma.06G202500 No alias U5 small nuclear ribonucleoprotein helicase 0.08 Orthogroups_2024-Update
Glyma.08G173500 No alias U5 small nuclear ribonucleoprotein helicase, putative 0.06 Orthogroups_2024-Update
Glyma.15G253800 No alias U5 small nuclear ribonucleoprotein helicase, putative 0.08 Orthogroups_2024-Update
Kfl00102_0100 kfl00102_0100_v1.1 (at1g20960 : 2806.0) embryo defective 1507 (emb1507);... 0.06 Orthogroups_2024-Update
Kfl00417_0080 kfl00417_0080_v1.1 (at5g61140 : 2262.0) Encodes a predicted protein with... 0.05 Orthogroups_2024-Update
LOC_Os03g11470 No alias DEAD/DEAH box helicase domain containing protein, expressed 0.04 Orthogroups_2024-Update
MA_81219g0030 No alias (at1g20960 : 1029.0) embryo defective 1507 (emb1507);... 0.02 Orthogroups_2024-Update
PSME_00000757-RA No alias (at5g61140 : 756.0) Encodes a predicted protein with 30%... 0.03 Orthogroups_2024-Update
PSME_00051380-RA No alias (at1g20960 : 1382.0) embryo defective 1507 (emb1507);... 0.03 Orthogroups_2024-Update
Pp1s84_129V6 No alias novel rna helicase familyprotein 0.04 Orthogroups_2024-Update
Seita.1G005500.1 No alias RNA helicase *(Brr2) 0.11 Orthogroups_2024-Update
Seita.9G492000.1 No alias RNA helicase *(Brr2) 0.02 Orthogroups_2024-Update
Solyc06g069480 No alias U5 small nuclear ribonucleoprotein helicase (AHRD V3.3... 0.03 Orthogroups_2024-Update
evm.model.tig00000865.27 No alias (at1g20960 : 291.0) embryo defective 1507 (emb1507);... 0.03 Orthogroups_2024-Update
evm.model.tig00000865.28 No alias (at1g20960 : 1091.0) embryo defective 1507 (emb1507);... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004402 histone acetyltransferase activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006473 protein acetylation IEP Predicted GO
BP GO:0006475 internal protein amino acid acetylation IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0008080 N-acetyltransferase activity IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016410 N-acyltransferase activity IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016573 histone acetylation IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0018393 internal peptidyl-lysine acetylation IEP Predicted GO
BP GO:0018394 peptidyl-lysine acetylation IEP Predicted GO
MF GO:0032947 protein-containing complex scaffold activity IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
MF GO:0034212 peptide N-acetyltransferase activity IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
BP GO:0043543 protein acylation IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 1286 1451
IPR001650 Helicase_C 668 813
IPR001650 Helicase_C 1545 1649
IPR011545 DEAD/DEAH_box_helicase_dom 438 611
IPR004179 Sec63-dom 936 1242
IPR004179 Sec63-dom 1769 2077
No external refs found!