Sopen06g027820

Description : Ribosomal protein L44

Gene families : OG_42_0001870 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001870_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen06g027820
Cluster	HCCA clusters: Cluster_58

Target	Alias	Description	ECC score	Gene Family Method
161986	No alias	Zinc-binding ribosomal protein family protein	0.08	Orthogroups_2024-Update
A4A49_42104	No alias	60s ribosomal protein l44	0.11	Orthogroups_2024-Update
A4A49_63762	No alias	60s ribosomal protein l44	0.06	Orthogroups_2024-Update
At3g23390	No alias	60S ribosomal protein L36a...	0.06	Orthogroups_2024-Update
At4g14320	No alias	Zinc-binding ribosomal protein family protein...	0.03	Orthogroups_2024-Update
Bradi1g26010	No alias	Zinc-binding ribosomal protein family protein	0.05	Orthogroups_2024-Update
Bradi1g28750	No alias	Zinc-binding ribosomal protein family protein	0.07	Orthogroups_2024-Update
Brara.A02648.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.15	Orthogroups_2024-Update
Brara.C03915.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Brara.D00648.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.1	Orthogroups_2024-Update
Brara.G00538.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.15	Orthogroups_2024-Update
Brara.H01878.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.1	Orthogroups_2024-Update
Cre06.g310700	No alias	Zinc-binding ribosomal protein family protein	0.07	Orthogroups_2024-Update
GRMZM2G009412	No alias	Zinc-binding ribosomal protein family protein	0.06	Orthogroups_2024-Update
Glyma.05G120700	No alias	Zinc-binding ribosomal protein family protein	0.06	Orthogroups_2024-Update
Glyma.08G075500	No alias	Zinc-binding ribosomal protein family protein	0.11	Orthogroups_2024-Update
Glyma.08G181300	No alias	Zinc-binding ribosomal protein family protein	0.05	Orthogroups_2024-Update
Glyma.15G051000	No alias	Zinc-binding ribosomal protein family protein	0.05	Orthogroups_2024-Update
HORVU5Hr1G081590.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
HORVU5Hr1G101600.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.22	Orthogroups_2024-Update
HORVU7Hr1G104300.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
Kfl00989_0050	kfl00989_0050_v1.1	(q96499\|rl44_goshi : 200.0) 60S ribosomal protein L44 -...	0.05	Orthogroups_2024-Update
LOC_Os07g33997	No alias	60S ribosomal protein L44, putative, expressed	0.03	Orthogroups_2024-Update
MA_10427098g0010	No alias	(at4g14320 : 163.0) Zinc-binding ribosomal protein...	0.04	Orthogroups_2024-Update
MA_99845g0010	No alias	(at4g14320 : 160.0) Zinc-binding ribosomal protein...	0.07	Orthogroups_2024-Update
Mp2g25770.1	No alias	component RPL36a of LSU proteome component	0.06	Orthogroups_2024-Update
PSME_00003754-RA	No alias	(at4g14320 : 164.0) Zinc-binding ribosomal protein...	0.05	Orthogroups_2024-Update
Potri.010G251500	No alias	Zinc-binding ribosomal protein family protein	0.08	Orthogroups_2024-Update
Pp1s115_63V6	No alias	60s ribosomal protein l44	0.12	Orthogroups_2024-Update
Pp1s22_326V6	No alias	60s ribosomal protein l44	0.19	Orthogroups_2024-Update
Pp1s2_415V6	No alias	60s ribosomal protein l44	0.11	Orthogroups_2024-Update
Pp1s6_198V6	No alias	60s ribosomal protein l44	0.16	Orthogroups_2024-Update
Pp1s74_73V6	No alias	60s ribosomal protein l44	0.16	Orthogroups_2024-Update
Seita.2G122900.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Seita.9G438600.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.16	Orthogroups_2024-Update
Sobic.001G018800.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.1	Orthogroups_2024-Update
Sobic.002G175100.1	No alias	component *(eL42) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
Solyc03g112850	No alias	60S ribosomal protein L44 (AHRD V3.3 *** RL44_GOSHI)	0.14	Orthogroups_2024-Update
Solyc06g071530	No alias	60S ribosomal protein L44 (AHRD V3.3 *** RL44_GOSHI)	0.17	Orthogroups_2024-Update
evm.model.contig_2517.1	No alias	(at4g14320 : 166.0) Zinc-binding ribosomal protein...	0.32	Orthogroups_2024-Update
evm.model.tig00000489.11	No alias	(q96499\|rl44_goshi : 166.0) 60S ribosomal protein L44 -...	0.14	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000552	Ribosomal_L44e	19	93

External Links

No external refs found!

Sopen06g027820

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation