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  5. Bradi2g00860

Bradi2g00860


Description : SIN3-like 4


Gene families : OG_42_0000363 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000363_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi2g00860
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
At1g24190 No alias SIN3-like 3 [Source:TAIR;Acc:AT1G24190] 0.02 Orthogroups_2024-Update
At3g01320 No alias Paired amphipathic helix protein Sin3-like 1... 0.05 Orthogroups_2024-Update
GRMZM2G334457 No alias SIN3-like 4 0.06 Orthogroups_2024-Update
Glyma.01G038300 No alias SIN3-like 4 0.06 Orthogroups_2024-Update
Glyma.02G026700 No alias SIN3-like 4 0.07 Orthogroups_2024-Update
Glyma.08G292900 No alias SIN3-like 3 0.07 Orthogroups_2024-Update
Glyma.13G067800 No alias SIN3-like 2 0.06 Orthogroups_2024-Update
Glyma.18G130400 No alias SIN3-like 4 0.04 Orthogroups_2024-Update
Glyma.19G016300 No alias SIN3-like 2 0.05 Orthogroups_2024-Update
HORVU1Hr1G000290.3 No alias component *(SNL) of histone deacetylase machineries 0.06 Orthogroups_2024-Update
HORVU3Hr1G000540.2 No alias component *(SNL) of histone deacetylase machineries 0.04 Orthogroups_2024-Update
LOC_Os01g01960 No alias transcriptional repressor, putative, expressed 0.02 Orthogroups_2024-Update
MA_18241g0010 No alias (at1g70060 : 799.0) Encodes a homolog of the... 0.12 Orthogroups_2024-Update
PSME_00002283-RA No alias (at1g24190 : 507.0) Enhances AtERF7-mediated ... 0.01 Orthogroups_2024-Update
PSME_00032314-RA No alias (at1g70060 : 409.0) Encodes a homolog of the... 0.03 Orthogroups_2024-Update
Seita.3G117100.1 No alias component *(SNL) of histone deacetylase machineries 0.03 Orthogroups_2024-Update
Seita.5G073400.1 No alias component *(SNL) of histone deacetylase machineries 0.11 Orthogroups_2024-Update
Sobic.003G101400.1 No alias component *(SNL) of histone deacetylase machineries 0.06 Orthogroups_2024-Update
Sobic.009G000100.1 No alias component *(SNL) of histone deacetylase machineries 0.03 Orthogroups_2024-Update
Sopen02g032110 No alias Paired amphipathic helix repeat 0.02 Orthogroups_2024-Update
Sopen05g002490 No alias Paired amphipathic helix repeat 0.03 Orthogroups_2024-Update
evm.model.tig00021234.23 No alias (at1g24190 : 93.2) Enhances AtERF7-mediated ... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR013194 HDAC_interact_dom 503 595
IPR003822 PAH 375 418
IPR003822 PAH 95 138
IPR003822 PAH 174 218
IPR031693 Sin3_C 1153 1401
No external refs found!