Bradi2g04950

Description : homologue of NAP57

Gene families : OG_42_0004273 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004273_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium release: Bradi2g04950
Cluster	HCCA clusters: Cluster_59

Target	Alias	Description	ECC score	Gene Family Method
81986	No alias	homologue of NAP57	0.02	Orthogroups_2024-Update
A4A49_39430	No alias	haca ribonucleoprotein complex subunit 4	0.04	Orthogroups_2024-Update
At3g57150	No alias	Uncharacterized protein At3g57150 (Fragment)...	0.05	Orthogroups_2024-Update
Brara.B02681.1	No alias	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.03	Orthogroups_2024-Update
Brara.G01728.1	No alias	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.12	Orthogroups_2024-Update
Cre03.g172950	No alias	homologue of NAP57	0.02	Orthogroups_2024-Update
GRMZM2G044128	No alias	homologue of NAP57	0.05	Orthogroups_2024-Update
GRMZM2G172956	No alias	homologue of NAP57	0.08	Orthogroups_2024-Update
Glyma.08G176900	No alias	homologue of NAP57	0.03	Orthogroups_2024-Update
Glyma.15G056100	No alias	homologue of NAP57	0.08	Orthogroups_2024-Update
HORVU2Hr1G027370.1	No alias	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.07	Orthogroups_2024-Update
HORVU2Hr1G027400.5	No alias	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.11	Orthogroups_2024-Update
LOC_Os03g25450	No alias	h/ACA ribonucleoprotein complex subunit 4, putative, expressed	0.05	Orthogroups_2024-Update
LOC_Os07g44190	No alias	h/ACA ribonucleoprotein complex subunit 4, putative, expressed	0.03	Orthogroups_2024-Update
Mp4g12650.1	No alias	pseudouridine synthase component Nap57/CBF5 of H/ACA...	0.03	Orthogroups_2024-Update
Potri.006G044100	No alias	homologue of NAP57	0.05	Orthogroups_2024-Update
Potri.016G041200	No alias	homologue of NAP57	0.08	Orthogroups_2024-Update
Seita.2G404800.1	No alias	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.11	Orthogroups_2024-Update
Seita.5G057000.1	No alias	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.13	Orthogroups_2024-Update
Sobic.002G389500.1	No alias	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.08	Orthogroups_2024-Update
Sobic.003G117100.1	No alias	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.09	Orthogroups_2024-Update
Solyc02g081810	No alias	H/ACA ribonucleoprotein complex subunit 4 (AHRD V3.3 ***...	0.06	Orthogroups_2024-Update
Sopen02g026410	No alias	DKCLD (NUC011) domain	0.1	Orthogroups_2024-Update
evm.model.contig_497.4	No alias	(at3g57150 : 559.0) Encodes a putative pseudouridine...	0.01	Orthogroups_2024-Update
evm.model.tig00000553.10	No alias	(at3g57150 : 635.0) Encodes a putative pseudouridine...	0.08	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	InterProScan predictions
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	Predicted GO
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003735	structural constituent of ribosome	IEP	Predicted GO
MF	GO:0005198	structural molecule activity	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
CC	GO:0005730	nucleolus	IEP	Predicted GO
CC	GO:0005741	mitochondrial outer membrane	IEP	Predicted GO
CC	GO:0005759	mitochondrial matrix	IEP	Predicted GO
CC	GO:0005840	ribosome	IEP	Predicted GO
BP	GO:0006364	rRNA processing	IEP	Predicted GO
BP	GO:0006412	translation	IEP	Predicted GO
BP	GO:0006518	peptide metabolic process	IEP	Predicted GO
MF	GO:0008168	methyltransferase activity	IEP	Predicted GO
MF	GO:0008483	transaminase activity	IEP	Predicted GO
MF	GO:0009982	pseudouridine synthase activity	IEP	Predicted GO
BP	GO:0016072	rRNA metabolic process	IEP	Predicted GO
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Predicted GO
MF	GO:0016866	intramolecular transferase activity	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
CC	GO:0019867	outer membrane	IEP	Predicted GO
CC	GO:0030684	preribosome	IEP	Predicted GO
CC	GO:0031090	organelle membrane	IEP	Predicted GO
CC	GO:0031966	mitochondrial membrane	IEP	Predicted GO
CC	GO:0031968	organelle outer membrane	IEP	Predicted GO
CC	GO:0031974	membrane-enclosed lumen	IEP	Predicted GO
CC	GO:0032040	small-subunit processome	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0043043	peptide biosynthetic process	IEP	Predicted GO
CC	GO:0043226	organelle	IEP	Predicted GO
CC	GO:0043228	non-membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043229	intracellular organelle	IEP	Predicted GO
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043233	organelle lumen	IEP	Predicted GO
BP	GO:0043603	cellular amide metabolic process	IEP	Predicted GO
BP	GO:0043604	amide biosynthetic process	IEP	Predicted GO
CC	GO:0044422	organelle part	IEP	Predicted GO
CC	GO:0044424	intracellular part	IEP	Predicted GO
CC	GO:0044429	mitochondrial part	IEP	Predicted GO
CC	GO:0044444	cytoplasmic part	IEP	Predicted GO
CC	GO:0044446	intracellular organelle part	IEP	Predicted GO
CC	GO:0044464	cell part	IEP	Predicted GO
CC	GO:0070013	intracellular organelle lumen	IEP	Predicted GO
CC	GO:0098588	bounding membrane of organelle	IEP	Predicted GO
CC	GO:0098805	whole membrane	IEP	Predicted GO
CC	GO:1990904	ribonucleoprotein complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR032819	TruB_C	242	308
IPR002478	PUA	312	384
IPR002501	PsdUridine_synth_N	125	241
IPR012960	Dyskerin-like	64	121

External Links

No external refs found!

Bradi2g04950

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation