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  5. Bradi2g07090

Bradi2g07090


Description : cold shock domain protein 1


Gene families : OG_42_0001475 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001475_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi2g07090
Cluster HCCA clusters: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
Brara.I04669.1 No alias cold-responsive mRNA chaperone *(CSD) & RNA chaperone... 0.03 Orthogroups_2024-Update
Solyc03g033500 No alias Zinc knuckle family protein (AHRD V3.3 *-* A0A061FDW4_THECC) 0.04 Orthogroups_2024-Update
Sopen01g053360 No alias 'Cold-shock' DNA-binding domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004096 catalase activity IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
InterPro domains Description Start Stop
IPR002059 CSP_DNA-bd 6 70
IPR001878 Znf_CCHC 174 190
IPR001878 Znf_CCHC 134 151
No external refs found!