Bradi2g16130

Description : FtsJ-like methyltransferase family protein

Gene families : OG_42_0003815 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003815_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium release: Bradi2g16130
Cluster	HCCA clusters: Cluster_59

Target	Alias	Description	ECC score	Gene Family Method
At4g25730	No alias	Putative rRNA methyltransferase...	0.18	Orthogroups_2024-Update
Brara.K00179.1	No alias	MRM2-type rRNA methyltransferase	0.17	Orthogroups_2024-Update
Cre12.g529500	No alias	FtsJ-like methyltransferase family protein	0.16	Orthogroups_2024-Update
Glyma.11G116800	No alias	FtsJ-like methyltransferase family protein	0.09	Orthogroups_2024-Update
Kfl00895_0010	kfl00895_0010_v1.1	(at4g25730 : 357.0) FtsJ-like methyltransferase family...	0.06	Orthogroups_2024-Update
LOC_Os05g49230	No alias	ribosomal RNA large subunit methyltransferase J,...	0.03	Orthogroups_2024-Update
Mp8g14990.1	No alias	no hits & (original description: none)	0.02	Orthogroups_2024-Update
Potri.009G118400	No alias	FtsJ-like methyltransferase family protein	0.04	Orthogroups_2024-Update
Pp1s22_254V6	No alias	rrna methyltransferase	0.09	Orthogroups_2024-Update
Seita.3G143200.1	No alias	MRM2-type rRNA methyltransferase	0.19	Orthogroups_2024-Update
Sobic.009G235200.1	No alias	MRM2-type rRNA methyltransferase	0.16	Orthogroups_2024-Update
Solyc10g046930	No alias	FtsJ-like methyltransferase family protein (AHRD V3.3...	0.04	Orthogroups_2024-Update
Solyc11g020810	No alias	FtsJ-like methyltransferase family protein (AHRD V3.3...	0.03	Orthogroups_2024-Update
Solyc11g020820	No alias	FtsJ-like methyltransferase family protein (AHRD V3.3...	0.02	Orthogroups_2024-Update
Sopen10g016730	No alias	FtsJ-like methyltransferase	0.13	Orthogroups_2024-Update
Sopen11g010770	No alias	FtsJ-like methyltransferase	0.12	Orthogroups_2024-Update
evm.model.contig_4562.1	No alias	(at4g25730 : 353.0) FtsJ-like methyltransferase family...	0.11	Orthogroups_2024-Update
evm.model.tig00000217.16	No alias	(at4g25730 : 263.0) FtsJ-like methyltransferase family...	0.06	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	InterProScan predictions
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	InterProScan predictions
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0032259	methylation	IEA	InterProScan predictions
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	IEP	Predicted GO
BP	GO:0002098	tRNA wobble uridine modification	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0005488	binding	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
CC	GO:0005643	nuclear pore	IEP	Predicted GO
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Predicted GO
BP	GO:0006298	mismatch repair	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006400	tRNA modification	IEP	Predicted GO
BP	GO:0006886	intracellular protein transport	IEP	Predicted GO
BP	GO:0006913	nucleocytoplasmic transport	IEP	Predicted GO
MF	GO:0008536	Ran GTPase binding	IEP	Predicted GO
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Predicted GO
BP	GO:0009451	RNA modification	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Predicted GO
MF	GO:0017016	Ras GTPase binding	IEP	Predicted GO
MF	GO:0017056	structural constituent of nuclear pore	IEP	Predicted GO
MF	GO:0019899	enzyme binding	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
CC	GO:0030684	preribosome	IEP	Predicted GO
MF	GO:0030983	mismatched DNA binding	IEP	Predicted GO
MF	GO:0031267	small GTPase binding	IEP	Predicted GO
MF	GO:0031369	translation initiation factor binding	IEP	Predicted GO
CC	GO:0032040	small-subunit processome	IEP	Predicted GO
CC	GO:0033588	Elongator holoenzyme complex	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
BP	GO:0046907	intracellular transport	IEP	Predicted GO
MF	GO:0051020	GTPase binding	IEP	Predicted GO
BP	GO:0051169	nuclear transport	IEP	Predicted GO
BP	GO:0051641	cellular localization	IEP	Predicted GO
BP	GO:0051649	establishment of localization in cell	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR012920	rRNA_MeTfrase_Spb1_C	604	804
IPR002877	rRNA_MeTrfase_FtsJ_dom	22	201
IPR024576	rRNA_MeTfrase_Spb1_DUF3381	234	383

External Links

No external refs found!

Bradi2g16130

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation