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  5. Bradi3g00350

Bradi3g00350


Description : HEAT repeat ;HECT-domain (ubiquitin-transferase)


Gene families : OG_42_0001466 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001466_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g00350
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
146155 No alias HEAT repeat ;HECT-domain (ubiquitin-transferase) 0.03 Orthogroups_2024-Update
A4A49_07184 No alias e3 ubiquitin-protein ligase upl4 0.03 Orthogroups_2024-Update
A4A49_28979 No alias e3 ubiquitin-protein ligase upl3 0.02 Orthogroups_2024-Update
At4g38600 No alias E3 ubiquitin-protein ligase UPL3... 0.08 Orthogroups_2024-Update
GRMZM2G328988 No alias ubiquitin-protein ligase 4 0.03 Orthogroups_2024-Update
GRMZM2G374574 No alias HEAT repeat ;HECT-domain (ubiquitin-transferase) 0.04 Orthogroups_2024-Update
Glyma.04G004000 No alias HEAT repeat ;HECT-domain (ubiquitin-transferase) 0.04 Orthogroups_2024-Update
Glyma.06G003600 No alias HEAT repeat ;HECT-domain (ubiquitin-transferase) 0.03 Orthogroups_2024-Update
Glyma.10G049100 No alias ubiquitin-protein ligase 4 0.06 Orthogroups_2024-Update
Glyma.11G107500 No alias HEAT repeat ;HECT-domain (ubiquitin-transferase) 0.08 Orthogroups_2024-Update
Glyma.12G032500 No alias HEAT repeat ;HECT-domain (ubiquitin-transferase) 0.07 Orthogroups_2024-Update
Kfl00965_0030 kfl00965_0030_v1.1 (at4g38600 : 514.0) encodes a member of HECT ubiquitin... 0.02 Orthogroups_2024-Update
MA_10428377g0020 No alias (at4g38600 : 758.0) encodes a member of HECT ubiquitin... 0.06 Orthogroups_2024-Update
MA_140610g0010 No alias (at4g38600 : 1157.0) encodes a member of HECT ubiquitin... 0.04 Orthogroups_2024-Update
MA_62286g0020 No alias (at4g38600 : 823.0) encodes a member of HECT ubiquitin... 0.03 Orthogroups_2024-Update
Mp1g24750.1 No alias monomeric E3 ubiquitin ligase (HECT) 0.03 Orthogroups_2024-Update
PSME_00000237-RA No alias (at4g38600 : 1659.0) encodes a member of HECT ubiquitin... 0.05 Orthogroups_2024-Update
PSME_00002631-RA No alias (at4g38600 : 1949.0) encodes a member of HECT ubiquitin... 0.04 Orthogroups_2024-Update
PSME_00021195-RA No alias (at4g38600 : 1459.0) encodes a member of HECT ubiquitin... 0.07 Orthogroups_2024-Update
Potri.006G132000 No alias ubiquitin-protein ligase 4 0.04 Orthogroups_2024-Update
Potri.009G134300 No alias HEAT repeat ;HECT-domain (ubiquitin-transferase) 0.04 Orthogroups_2024-Update
Pp1s116_90V6 No alias hect ubiquitin-protein 0.02 Orthogroups_2024-Update
Pp1s7030_1V6 No alias No description available 0.01 Orthogroups_2024-Update
Seita.1G001500.1 No alias E3 ubiquitin ligase *(UPL3) 0.06 Orthogroups_2024-Update
Seita.3G213700.1 No alias E3 ubiquitin ligase *(UPL3) 0.04 Orthogroups_2024-Update
Seita.7G028700.1 No alias E3 ubiquitin ligase *(UPL3) 0.11 Orthogroups_2024-Update
Sobic.006G032300.1 No alias E3 ubiquitin ligase *(UPL3) 0.14 Orthogroups_2024-Update
Solyc10g055450 No alias E3 ubiquitin-protein ligase (AHRD V3.3 *** G7JNF2_MEDTR) 0.03 Orthogroups_2024-Update
Sopen01g053570 No alias HECT-domain (ubiquitin-transferase) 0.02 Orthogroups_2024-Update
Sopen10g025230 No alias HECT-domain (ubiquitin-transferase) 0.05 Orthogroups_2024-Update
evm.model.tig00020554.37 No alias (at4g38600 : 309.0) encodes a member of HECT ubiquitin... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004402 histone acetyltransferase activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006473 protein acetylation IEP Predicted GO
BP GO:0006475 internal protein amino acid acetylation IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0008080 N-acetyltransferase activity IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016410 N-acyltransferase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016573 histone acetylation IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
MF GO:0017069 snRNA binding IEP Predicted GO
MF GO:0017070 U6 snRNA binding IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0018393 internal peptidyl-lysine acetylation IEP Predicted GO
BP GO:0018394 peptidyl-lysine acetylation IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
MF GO:0030623 U5 snRNA binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0032947 protein-containing complex scaffold activity IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
MF GO:0034212 peptide N-acetyltransferase activity IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
BP GO:0043543 protein acylation IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000569 HECT_dom 1505 1851
No external refs found!