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  5. Bradi3g01297

Bradi3g01297


Description : transcription regulatory protein SNF2, putative


Gene families : OG_42_0007138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007138_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g01297
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
At2g46020 No alias ATP-dependent helicase BRM... 0.06 Orthogroups_2024-Update
Glyma.07G069400 No alias transcription regulatory protein SNF2, putative 0.03 Orthogroups_2024-Update
Glyma.09G257900 No alias transcription regulatory protein SNF2, putative 0.09 Orthogroups_2024-Update
Glyma.16G035100 No alias transcription regulatory protein SNF2, putative 0.1 Orthogroups_2024-Update
Glyma.18G234700 No alias transcription regulatory protein SNF2, putative 0.08 Orthogroups_2024-Update
HORVU6Hr1G006050.1 No alias SMARCA component *(SYD/BRM/MINU) 0.11 Orthogroups_2024-Update
Kfl00148_0270 kfl00148_0270_v1.1 (at2g46020 : 1119.0) Encodes a SWI/SNF chromatin... 0.02 Orthogroups_2024-Update
Mp1g17010.1 No alias chromatin remodeling factor (Snf2) 0.03 Orthogroups_2024-Update
PSME_00012052-RA No alias (at2g46020 : 1579.0) Encodes a SWI/SNF chromatin... 0.08 Orthogroups_2024-Update
Potri.002G160900 No alias transcription regulatory protein SNF2, putative 0.03 Orthogroups_2024-Update
Potri.014G086500 No alias transcription regulatory protein SNF2, putative 0.02 Orthogroups_2024-Update
Pp1s25_252V6 No alias snf2 super family 0.04 Orthogroups_2024-Update
Seita.2G227500.1 No alias SMARCA component *(SYD/BRM/MINU) 0.11 Orthogroups_2024-Update
Seita.2G227600.1 No alias SMARCA component *(SYD/BRM/MINU) 0.1 Orthogroups_2024-Update
Sobic.004G009600.1 No alias SMARCA component *(SYD/BRM/MINU) 0.09 Orthogroups_2024-Update
Sopen01g038570 No alias SNF2 family N-terminal domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 1311 1420
IPR000330 SNF2_N 992 1287
No external refs found!