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  5. Bradi3g07970

Bradi3g07970


Description : syntaxin of plants 124


Gene families : OG_42_0000336 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000336_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g07970
Cluster HCCA clusters: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
151097 No alias syntaxin of plants 124 0.04 Orthogroups_2024-Update
74098 No alias syntaxin of plants 124 0.04 Orthogroups_2024-Update
A4A49_24964 No alias syntaxin-121 0.04 Orthogroups_2024-Update
Bradi1g56720 No alias syntaxin of plants 131 0.02 Orthogroups_2024-Update
Brara.E03504.1 No alias Qa-type SYP1-group component of SNARE membrane fusion complex 0.02 Orthogroups_2024-Update
GRMZM2G029270 No alias syntaxin of plants 124 0.04 Orthogroups_2024-Update
GRMZM2G414540 No alias syntaxin of plants 121 0.03 Orthogroups_2024-Update
HORVU2Hr1G043130.15 No alias Qa-type SYP1-group component of SNARE membrane fusion complex 0.02 Orthogroups_2024-Update
HORVU3Hr1G115630.1 No alias Qa-type SYP1-group component of SNARE membrane fusion complex 0.03 Orthogroups_2024-Update
LOC_Os06g07200 No alias syntaxin, putative, expressed 0.03 Orthogroups_2024-Update
Potri.016G068600 No alias syntaxin of plants 121 0.03 Orthogroups_2024-Update
Pp1s98_68V6 No alias Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 0.02 Orthogroups_2024-Update
Seita.9G063400.1 No alias Qa-type SYP1-group component of SNARE membrane fusion complex 0.03 Orthogroups_2024-Update
Sobic.008G115500.1 No alias Qa-type SYP1-group component of SNARE membrane fusion complex 0.04 Orthogroups_2024-Update
Solyc07g052470 No alias Syntaxin, putative (AHRD V3.3 *** B9SUS4_RICCO) 0.03 Orthogroups_2024-Update
Solyc10g081850 No alias Syntaxin, putative (AHRD V3.3 *** B9SDJ9_RICCO) 0.03 Orthogroups_2024-Update
Sopen10g032370 No alias SNARE domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000727 T_SNARE_dom 250 301
IPR006011 Syntaxin_N 36 248
No external refs found!