Bradi3g08900

Description : Ribosomal protein L6 family protein

Gene families : OG_42_0002426 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002426_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium release: Bradi3g08900
Cluster	HCCA clusters: Cluster_132

Target	Alias	Description	ECC score	Gene Family Method
270686	No alias	Ribosomal protein L6 family protein	0.11	Orthogroups_2024-Update
A4A49_32163	No alias	60s ribosomal protein l6-1	0.02	Orthogroups_2024-Update
At1g18540	No alias	60S ribosomal protein L6-1...	0.03	Orthogroups_2024-Update
Brara.B02104.1	No alias	component *(eL6) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Brara.H02417.1	No alias	component *(eL6) of large ribosomal-subunit (LSU) proteome	0.17	Orthogroups_2024-Update
Brara.I04782.1	No alias	component *(eL6) of large ribosomal-subunit (LSU) proteome	0.14	Orthogroups_2024-Update
Cre01.g011000	No alias	Ribosomal protein L6 family protein	0.12	Orthogroups_2024-Update
GRMZM2G024647	No alias	Ribosomal protein L6 family protein	0.04	Orthogroups_2024-Update
Glyma.05G184000	No alias	Ribosomal protein L6 family protein	0.12	Orthogroups_2024-Update
Glyma.08G141700	No alias	Ribosomal protein L6 family protein	0.11	Orthogroups_2024-Update
Glyma.08G141800	No alias	Ribosomal protein L6 family protein	0.02	Orthogroups_2024-Update
Glyma.08G151900	No alias	Ribosomal protein L6 family protein	0.07	Orthogroups_2024-Update
Glyma.15G271300	No alias	Ribosomal protein L6 family protein	0.13	Orthogroups_2024-Update
HORVU6Hr1G041750.3	No alias	component *(eL6) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
HORVU6Hr1G052600.3	No alias	component *(eL6) of large ribosomal-subunit (LSU) proteome	0.11	Orthogroups_2024-Update
Kfl00488_0040	kfl00488_0040_v1.1	(p34091\|rl6_mescr : 230.0) 60S ribosomal protein L6...	0.08	Orthogroups_2024-Update
LOC_Os02g37862	No alias	60S ribosomal protein L6, putative, expressed	0.05	Orthogroups_2024-Update
LOC_Os04g39700	No alias	60S ribosomal protein L6, putative, expressed	0.03	Orthogroups_2024-Update
MA_108607g0010	No alias	(p34091\|rl6_mescr : 343.0) 60S ribosomal protein L6...	0.08	Orthogroups_2024-Update
PSME_00031628-RA	No alias	(p34091\|rl6_mescr : 312.0) 60S ribosomal protein L6...	0.03	Orthogroups_2024-Update
PSME_00044973-RA	No alias	(p34091\|rl6_mescr : 327.0) 60S ribosomal protein L6...	0.07	Orthogroups_2024-Update
Potri.009G065800	No alias	Ribosomal protein L6 family protein	0.03	Orthogroups_2024-Update
Pp1s59_122V6	No alias	60s ribosomal protein	0.09	Orthogroups_2024-Update
Seita.1G214900.1	No alias	component *(eL6) of large ribosomal-subunit (LSU) proteome	0.12	Orthogroups_2024-Update
Seita.7G134600.1	No alias	component *(eL6) of large ribosomal-subunit (LSU) proteome	0.13	Orthogroups_2024-Update
Sobic.004G198400.1	No alias	component *(eL6) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
Sobic.006G116700.1	No alias	component *(eL6) of large ribosomal-subunit (LSU) proteome	0.15	Orthogroups_2024-Update
Solyc05g054070	No alias	60S ribosomal protein L6 (AHRD V3.3 *** RL6_MESCR)	0.09	Orthogroups_2024-Update
Solyc11g012110	No alias	60S ribosomal protein L6 (AHRD V3.3 *** RL6_MESCR)	0.11	Orthogroups_2024-Update
Sopen05g032560	No alias	Ribosomal protein L6e	0.14	Orthogroups_2024-Update
Sopen11g006900	No alias	Ribosomal protein L6e	0.15	Orthogroups_2024-Update
evm.model.contig_2016.11	No alias	(p34091\|rl6_mescr : 131.0) 60S ribosomal protein L6...	0.1	Orthogroups_2024-Update
evm.model.tig00021127.127	No alias	(at1g74050 : 196.0) Ribosomal protein L6 family protein;...	0.15	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000105	histidine biosynthetic process	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003697	single-stranded DNA binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003747	translation release factor activity	IEP	Predicted GO
MF	GO:0003916	DNA topoisomerase activity	IEP	Predicted GO
MF	GO:0003918	DNA topoisomerase type II (ATP-hydrolyzing) activity	IEP	Predicted GO
MF	GO:0003922	GMP synthase (glutamine-hydrolyzing) activity	IEP	Predicted GO
MF	GO:0004399	histidinol dehydrogenase activity	IEP	Predicted GO
CC	GO:0005643	nuclear pore	IEP	Predicted GO
CC	GO:0005694	chromosome	IEP	Predicted GO
BP	GO:0006177	GMP biosynthetic process	IEP	Predicted GO
BP	GO:0006265	DNA topological change	IEP	Predicted GO
BP	GO:0006334	nucleosome assembly	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006415	translational termination	IEP	Predicted GO
BP	GO:0006547	histidine metabolic process	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
MF	GO:0008079	translation termination factor activity	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
BP	GO:0009119	ribonucleoside metabolic process	IEP	Predicted GO
BP	GO:0009163	nucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0016043	cellular component organization	IEP	Predicted GO
MF	GO:0016462	pyrophosphatase activity	IEP	Predicted GO
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Predicted GO
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	Predicted GO
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
CC	GO:0019867	outer membrane	IEP	Predicted GO
BP	GO:0022411	cellular component disassembly	IEP	Predicted GO
MF	GO:0031072	heat shock protein binding	IEP	Predicted GO
BP	GO:0032984	protein-containing complex disassembly	IEP	Predicted GO
BP	GO:0042278	purine nucleoside metabolic process	IEP	Predicted GO
BP	GO:0042451	purine nucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0042455	ribonucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0043624	cellular protein complex disassembly	IEP	Predicted GO
BP	GO:0043933	protein-containing complex subunit organization	IEP	Predicted GO
BP	GO:0046037	GMP metabolic process	IEP	Predicted GO
BP	GO:0046128	purine ribonucleoside metabolic process	IEP	Predicted GO
BP	GO:0046129	purine ribonucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
MF	GO:0051082	unfolded protein binding	IEP	Predicted GO
BP	GO:0052803	imidazole-containing compound metabolic process	IEP	Predicted GO
MF	GO:0061505	DNA topoisomerase II activity	IEP	Predicted GO
BP	GO:0071103	DNA conformation change	IEP	Predicted GO
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
BP	GO:1901068	guanosine-containing compound metabolic process	IEP	Predicted GO
BP	GO:1901070	guanosine-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO
BP	GO:1901659	glycosyl compound biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000915	60S_ribosomal_L6E	112	219

External Links

No external refs found!

Bradi3g08900

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation