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  5. Bradi3g12902

Bradi3g12902


Description : Tudor/PWWP/MBT domain-containing protein


Gene families : OG_42_0001430 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001430_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g12902
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
404055 No alias Tudor/PWWP/MBT domain-containing protein 0.07 Orthogroups_2024-Update
Brara.G01993.1 No alias HUA2-type transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G021483 No alias Tudor/PWWP/MBT domain-containing protein 0.03 Orthogroups_2024-Update
GRMZM2G075628 No alias Tudor/PWWP/MBT domain-containing protein 0.05 Orthogroups_2024-Update
Glyma.02G149200 No alias Tudor/PWWP/MBT domain-containing protein 0.08 Orthogroups_2024-Update
Glyma.03G151400 No alias Tudor/PWWP/MBT domain-containing protein 0.08 Orthogroups_2024-Update
Glyma.10G024500 No alias Tudor/PWWP/MBT domain-containing protein 0.07 Orthogroups_2024-Update
Glyma.11G100400 No alias Tudor/PWWP/MBT domain-containing protein 0.05 Orthogroups_2024-Update
Glyma.12G026600 No alias Tudor/PWWP/MBT domain-containing protein 0.07 Orthogroups_2024-Update
Glyma.19G153900 No alias Tudor/PWWP/MBT domain-containing protein 0.02 Orthogroups_2024-Update
Kfl00285_0010 kfl00285_0010_v1.1 (at5g23150 : 115.0) Putative transcription factor.... 0.03 Orthogroups_2024-Update
MA_3338g0010 No alias (at5g23150 : 182.0) Putative transcription factor.... 0.07 Orthogroups_2024-Update
Mp8g15320.1 No alias transcription factor (HUA2) 0.04 Orthogroups_2024-Update
PSME_00007387-RA No alias (at2g40370 : 177.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
PSME_00015772-RA No alias (at5g23150 : 301.0) Putative transcription factor.... 0.09 Orthogroups_2024-Update
Potri.005G092700 No alias Tudor/PWWP/MBT domain-containing protein 0.02 Orthogroups_2024-Update
Potri.014G138700 No alias Tudor/PWWP/MBT domain-containing protein 0.03 Orthogroups_2024-Update
Seita.2G414600.1 No alias HUA2-type transcription factor 0.11 Orthogroups_2024-Update
Seita.6G001200.1 No alias HUA2-type transcription factor 0.08 Orthogroups_2024-Update
Seita.9G398300.1 No alias HUA2-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.001G365900.1 No alias HUA2-type transcription factor 0.04 Orthogroups_2024-Update
Sobic.007G000100.1 No alias HUA2-type transcription factor 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
InterPro domains Description Start Stop
IPR006903 RNA_pol_II-bd 887 954
IPR000313 PWWP_dom 20 103
No external refs found!