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  5. Bradi3g15320

Bradi3g15320


Description : PCF11P-similar protein 4


Gene families : OG_42_0001726 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001726_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g15320
Cluster HCCA clusters: Cluster_225

Target Alias Description ECC score Gene Family Method Actions
Glyma.03G191200 No alias ENTH/VHS family protein 0.04 Orthogroups_2024-Update
Glyma.10G251100 No alias PCF11P-similar protein 4 0.09 Orthogroups_2024-Update
Glyma.19G191800 No alias ENTH/VHS family protein 0.03 Orthogroups_2024-Update
Glyma.19G191900 No alias ENTH/VHS family protein 0.03 Orthogroups_2024-Update
Kfl01244_0020 kfl01244_0020_v1.1 (at4g04885 : 82.4) Encodes PCFS4 (Pcf11p-similar protein... 0.03 Orthogroups_2024-Update
Mp8g18940.1 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.03 Orthogroups_2024-Update
PSME_00040454-RA No alias (at4g04885 : 238.0) Encodes PCFS4 (Pcf11p-similar... 0.03 Orthogroups_2024-Update
Sobic.007G065400.1 No alias component *(Pcf11) of Cleavage Factor II (CF-IIm) complex 0.05 Orthogroups_2024-Update
evm.model.tig00000396.26 No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005777 peroxisome IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0007031 peroxisome organization IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR006903 RNA_pol_II-bd 90 143
No external refs found!