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  5. Sopen07g004810

Sopen07g004810


Description : PROCN (NUC071) domain


Gene families : OG_42_0004183 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004183_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen07g004810
Cluster HCCA clusters: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
Glyma.15G007100 No alias Pre-mRNA-processing-splicing factor 0.03 Orthogroups_2024-Update
Mp1g12380.1 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.02 Orthogroups_2024-Update
Pp1s101_8V6 No alias F18B13.15; splicing factor, putative [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update
Sobic.010G053600.3 No alias protein factor *(PRPF8/SUS2) of MAC... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA InterProScan predictions
MF GO:0003723 RNA binding IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0017070 U6 snRNA binding IEA InterProScan predictions
MF GO:0030623 U5 snRNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR012591 PRO8NT 107 258
IPR019582 RRM_spliceosomal_PrP8 1034 1124
IPR012592 PROCN 444 849
IPR019581 Prp8_U5-snRNA-bd 1259 1392
IPR000555 JAMM/MPN+_dom 2150 2248
IPR012984 PROCT 2261 2381
IPR019580 Prp8_U6-snRNA-bd 1491 1649
IPR021983 PRP8_domainIV 1809 2038
No external refs found!