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  5. Bradi3g39580

Bradi3g39580


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_42_0004523 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004523_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g39580
Cluster HCCA clusters: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
At2g40360 No alias Ribosome biogenesis protein BOP1 homolog... 0.08 Orthogroups_2024-Update
Brara.C02279.1 No alias component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.16 Orthogroups_2024-Update
Cre10.g417950 No alias Transducin/WD40 repeat-like superfamily protein 0.12 Orthogroups_2024-Update
Glyma.12G167800 No alias Transducin/WD40 repeat-like superfamily protein 0.12 Orthogroups_2024-Update
Kfl00363_0120 kfl00363_0120_v1.1 (at2g40360 : 713.0) Transducin/WD40 repeat-like... 0.08 Orthogroups_2024-Update
Mp2g26050.1 No alias component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.05 Orthogroups_2024-Update
Pp1s3_332V6 No alias block of proliferation 1 0.03 Orthogroups_2024-Update
Seita.2G117100.1 No alias component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.03 Orthogroups_2024-Update
Seita.6G140100.1 No alias component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.23 Orthogroups_2024-Update
Sobic.003G156500.1 No alias component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.11 Orthogroups_2024-Update
Solyc01g103740 No alias No description available 0.04 Orthogroups_2024-Update
Sopen01g046140 No alias BOP1NT (NUC169) domain 0.09 Orthogroups_2024-Update
evm.model.contig_4408.23 No alias (at2g40360 : 214.0) Transducin/WD40 repeat-like... 0.1 Orthogroups_2024-Update
evm.model.tig00000382.38 No alias (at2g40360 : 570.0) Transducin/WD40 repeat-like... 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
BP GO:0006364 rRNA processing IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016778 diphosphotransferase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 583 617
IPR001680 WD40_repeat 332 368
IPR001680 WD40_repeat 633 672
IPR012953 BOP1_N_dom 74 330
No external refs found!