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  5. Sopen07g006580

Sopen07g006580


Description : PPR repeat family


Gene families : OG_42_0002729 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002729_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen07g006580
Cluster HCCA clusters: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
Bradi1g22890 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g31370 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G177169 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.09G056200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.15G162500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Seita.4G191000.1 No alias stability factor *(PPR10) 0.04 Orthogroups_2024-Update
Sobic.010G215500.1 No alias stability factor *(PPR10) 0.03 Orthogroups_2024-Update
Solyc07g017760 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 302 331
IPR002885 Pentatricopeptide_repeat 225 277
IPR002885 Pentatricopeptide_repeat 396 453
IPR002885 Pentatricopeptide_repeat 639 696
IPR002885 Pentatricopeptide_repeat 716 748
IPR002885 Pentatricopeptide_repeat 334 381
IPR002885 Pentatricopeptide_repeat 544 592
IPR002885 Pentatricopeptide_repeat 754 803
IPR002885 Pentatricopeptide_repeat 474 521
No external refs found!