Bradi3g45880


Description : auxin response factor 1


Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g45880
Cluster HCCA clusters: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
At1g19850 No alias Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993] 0.03 Orthogroups_2024-Update
Bradi3g03407 No alias Transcriptional factor B3 family protein /... 0.02 Orthogroups_2024-Update
Bradi3g28950 No alias auxin response factor 16 0.02 Orthogroups_2024-Update
Brara.A00733.1 No alias ARF-type transcription factor 0.04 Orthogroups_2024-Update
Brara.H02379.1 No alias ARF-type transcription factor & auxin signal mediator... 0.03 Orthogroups_2024-Update
Brara.I02823.1 No alias ARF-type transcription factor 0.05 Orthogroups_2024-Update
GRMZM2G137413 No alias auxin response factor 1 0.03 Orthogroups_2024-Update
Glyma.01G103500 No alias auxin response factor 9 0.04 Orthogroups_2024-Update
Glyma.02G281700 No alias auxin response factor 6 0.03 Orthogroups_2024-Update
Glyma.03G258300 No alias auxin response factor 18 0.03 Orthogroups_2024-Update
Glyma.06G164900 No alias auxin response factor 2 0.03 Orthogroups_2024-Update
Glyma.08G008100 No alias auxin response factor 2 0.03 Orthogroups_2024-Update
Glyma.09G072200 No alias Transcriptional factor B3 family protein /... 0.03 Orthogroups_2024-Update
Glyma.10G210600 No alias auxin response factor 16 0.03 Orthogroups_2024-Update
Glyma.12G076200 No alias auxin response factor 10 0.03 Orthogroups_2024-Update
Glyma.14G032700 No alias auxin response factor 6 0.05 Orthogroups_2024-Update
Glyma.14G217700 No alias Transcriptional factor B3 family protein /... 0.02 Orthogroups_2024-Update
Glyma.16G023600 No alias auxin response factor 18 0.03 Orthogroups_2024-Update
Glyma.18G184500 No alias auxin response factor 9 0.03 Orthogroups_2024-Update
Glyma.19G181900 No alias auxin response factor 16 0.02 Orthogroups_2024-Update
HORVU6Hr1G058890.2 No alias ARF-type transcription factor 0.02 Orthogroups_2024-Update
MA_10432349g0010 No alias (at5g62000 : 394.0) Encodes an auxin response factor.... 0.02 Orthogroups_2024-Update
MA_2237g0020 No alias (at4g30080 : 537.0) Involved in root cap cell... 0.05 Orthogroups_2024-Update
Mp4g11820.1 No alias transcription factor (ARF) 0.02 Orthogroups_2024-Update
PSME_00015886-RA No alias (at1g30330 : 314.0) Encodes a member of the auxin... 0.04 Orthogroups_2024-Update
Potri.001G066200 No alias auxin response factor 2 0.02 Orthogroups_2024-Update
Pp1s133_56V6 No alias auxin response factor 8 0.02 Orthogroups_2024-Update
Pp1s14_392V6 No alias arf1-binding protein 0.02 Orthogroups_2024-Update
Pp1s86_1V6 No alias auxin response 0.02 Orthogroups_2024-Update
Seita.3G321500.1 No alias ARF-type transcription factor 0.05 Orthogroups_2024-Update
Sobic.003G003800.1 No alias ARF-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.003G298600.1 No alias ARF-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.007G203500.1 No alias ARF-type transcription factor & auxin signal mediator... 0.05 Orthogroups_2024-Update
Sopen00g003680 No alias Auxin response factor 0.02 Orthogroups_2024-Update
Sopen02g022450 No alias Auxin response factor 0.02 Orthogroups_2024-Update
Sopen03g037200 No alias Auxin response factor 0.03 Orthogroups_2024-Update
Sopen05g027770 No alias Auxin response factor 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
BP GO:0009725 response to hormone IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004325 ferrochelatase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006497 protein lipidation IEP Predicted GO
BP GO:0006505 GPI anchor metabolic process IEP Predicted GO
BP GO:0006506 GPI anchor biosynthetic process IEP Predicted GO
BP GO:0006643 membrane lipid metabolic process IEP Predicted GO
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Predicted GO
BP GO:0006664 glycolipid metabolic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
BP GO:0006783 heme biosynthetic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0009247 glycolipid biosynthetic process IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient IEP Predicted GO
BP GO:0015991 ATP hydrolysis coupled proton transport IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
CC GO:0017119 Golgi transport complex IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030118 clathrin coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030125 clathrin vesicle coat IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Predicted GO
CC GO:0030132 clathrin coat of coated pit IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
BP GO:0032012 regulation of ARF protein signal transduction IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042168 heme metabolic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
BP GO:0045017 glycerolipid biosynthetic process IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
BP GO:0046467 membrane lipid biosynthetic process IEP Predicted GO
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predicted GO
BP GO:0046578 regulation of Ras protein signal transduction IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0090662 ATP hydrolysis coupled transmembrane transport IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
BP GO:0099131 ATP hydrolysis coupled ion transmembrane transport IEP Predicted GO
BP GO:0099132 ATP hydrolysis coupled cation transmembrane transport IEP Predicted GO
MF GO:1901567 fatty acid derivative binding IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
BP GO:1902531 regulation of intracellular signal transduction IEP Predicted GO
BP GO:1903509 liposaccharide metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 127 227
IPR010525 Auxin_resp 253 335
IPR033389 AUX/IAA_dom 593 637
IPR033389 AUX/IAA_dom 536 582
No external refs found!