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Description : Ribosomal RNA processing Brix domain protein
Gene families : OG_42_0004734 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004734_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brachypodium release: Bradi3g47400 | |
| Cluster | HCCA clusters: Cluster_59 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| At1g52930 | No alias | Ribosome biogenesis protein BRX1 homolog 2... | 0.08 | Orthogroups_2024-Update | |
| At3g15460 | No alias | Ribosome biogenesis protein BRX1 homolog 1... | 0.04 | Orthogroups_2024-Update | |
| Brara.A03134.1 | No alias | assembly factor involved in ITS1 rRNA removal *(BRIX1) | 0.03 | Orthogroups_2024-Update | |
| Brara.E02594.1 | No alias | assembly factor involved in ITS1 rRNA removal *(BRIX1) | 0.05 | Orthogroups_2024-Update | |
| Cre02.g095400 | No alias | Ribosomal RNA processing Brix domain protein | 0.15 | Orthogroups_2024-Update | |
| HORVU6Hr1G052560.2 | No alias | assembly factor involved in ITS1 rRNA removal *(BRIX1) | 0.02 | Orthogroups_2024-Update | |
| Kfl00237_0010 | kfl00237_0010_v1.1 | (at3g15460 : 339.0) Ribosomal RNA processing Brix domain... | 0.04 | Orthogroups_2024-Update | |
| Mp4g04670.1 | No alias | BRX1 assembly factor involved in ITS1 rRNA removal | 0.05 | Orthogroups_2024-Update | |
| Pp1s106_134V6 | No alias | brix domain containing 2 | 0.02 | Orthogroups_2024-Update | |
| Seita.1G215000.1 | No alias | assembly factor involved in ITS1 rRNA removal *(BRIX1) | 0.22 | Orthogroups_2024-Update | |
| Sobic.004G198500.1 | No alias | assembly factor involved in ITS1 rRNA removal *(BRIX1) | 0.19 | Orthogroups_2024-Update | |
| Solyc04g016380 | No alias | Ribosome biogenesis protein brix, putative (AHRD V3.3... | 0.13 | Orthogroups_2024-Update | |
| evm.model.tig00001206.16 | No alias | (at1g52930 : 204.0) Ribosomal RNA processing Brix domain... | 0.11 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0001882 | nucleoside binding | IEP | Predicted GO |
| MF | GO:0001883 | purine nucleoside binding | IEP | Predicted GO |
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0004749 | ribose phosphate diphosphokinase activity | IEP | Predicted GO |
| MF | GO:0005488 | binding | IEP | Predicted GO |
| MF | GO:0005515 | protein binding | IEP | Predicted GO |
| MF | GO:0005525 | GTP binding | IEP | Predicted GO |
| CC | GO:0005634 | nucleus | IEP | Predicted GO |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006334 | nucleosome assembly | IEP | Predicted GO |
| BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
| BP | GO:0006396 | RNA processing | IEP | Predicted GO |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
| MF | GO:0008483 | transaminase activity | IEP | Predicted GO |
| MF | GO:0008536 | Ran GTPase binding | IEP | Predicted GO |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | Predicted GO |
| BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
| BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
| MF | GO:0016769 | transferase activity, transferring nitrogenous groups | IEP | Predicted GO |
| MF | GO:0016778 | diphosphotransferase activity | IEP | Predicted GO |
| MF | GO:0017076 | purine nucleotide binding | IEP | Predicted GO |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | Predicted GO |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
| CC | GO:0030684 | preribosome | IEP | Predicted GO |
| CC | GO:0032040 | small-subunit processome | IEP | Predicted GO |
| MF | GO:0032549 | ribonucleoside binding | IEP | Predicted GO |
| MF | GO:0032550 | purine ribonucleoside binding | IEP | Predicted GO |
| MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Predicted GO |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Predicted GO |
| BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
| BP | GO:0034728 | nucleosome organization | IEP | Predicted GO |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
| MF | GO:0036094 | small molecule binding | IEP | Predicted GO |
| BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
| MF | GO:0043168 | anion binding | IEP | Predicted GO |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | Predicted GO |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Predicted GO |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR007109 | Brix | 67 | 255 |
| No external refs found! |