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  5. Bradi3g51950

Bradi3g51950


Description : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain


Gene families : OG_42_0000452 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi3g51950
Cluster HCCA clusters: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
A4A49_39411 No alias ultraviolet-b receptor uvr8 0.01 Orthogroups_2024-Update
GRMZM2G124371 No alias Regulator of chromosome condensation (RCC1) family with... 0.04 Orthogroups_2024-Update
Glyma.03G040800 No alias Regulator of chromosome condensation (RCC1) family with... 0.02 Orthogroups_2024-Update
PSME_00003946-RA No alias (at5g19420 : 1170.0) Regulator of chromosome... 0.01 Orthogroups_2024-Update
PSME_00003947-RA No alias (at5g19420 : 205.0) Regulator of chromosome condensation... 0.02 Orthogroups_2024-Update
Sobic.003G269400.2 No alias Unknown function 0.01 Orthogroups_2024-Update
Solyc02g081250 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.01 Orthogroups_2024-Update
Sopen02g025890 No alias Regulator of chromosome condensation (RCC1) repeat 0.01 Orthogroups_2024-Update
Sopen12g034380 No alias Regulator of chromosome condensation (RCC1) repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR013591 Brevis_radix_dom 974 1026
IPR001849 PH_domain 16 124
IPR000408 Reg_chr_condens 484 533
IPR000408 Reg_chr_condens 367 419
IPR000408 Reg_chr_condens 316 364
IPR000408 Reg_chr_condens 422 471
IPR000408 Reg_chr_condens 588 637
IPR000306 Znf_FYVE 647 707
No external refs found!