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  5. Bradi4g10327

Bradi4g10327


Description : polyubiquitin 10


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi4g10327
Cluster HCCA clusters: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
19615 No alias polyubiquitin 10 0.04 Orthogroups_2024-Update
At2g35635 No alias UBQ7 [Source:UniProtKB/TrEMBL;Acc:A0A178VL95] 0.03 Orthogroups_2024-Update
At2g36170 No alias Ubiquitin-60S ribosomal protein L40-1... 0.04 Orthogroups_2024-Update
Bradi4g10341 No alias polyubiquitin 10 0.02 Orthogroups_2024-Update
Bradi4g38540 No alias ubiquitin extension protein 1 0.06 Orthogroups_2024-Update
Brara.C01815.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.2 Orthogroups_2024-Update
Brara.C02349.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.13 Orthogroups_2024-Update
Brara.D00067.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Brara.E00858.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Brara.E00859.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.13 Orthogroups_2024-Update
Brara.G00981.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.12 Orthogroups_2024-Update
Brara.G01965.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Brara.I03230.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
Brara.I03566.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
Brara.I04302.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.12 Orthogroups_2024-Update
Cre01.g007051 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.15 Orthogroups_2024-Update
Cre06.g273600 No alias Ribosomal protein S27a / Ubiquitin family protein 0.13 Orthogroups_2024-Update
GRMZM2G006293 No alias Ribosomal protein S27a / Ubiquitin family protein 0.09 Orthogroups_2024-Update
GRMZM2G047732 No alias Ribosomal protein S27a / Ubiquitin family protein 0.07 Orthogroups_2024-Update
GRMZM2G168829 No alias polyubiquitin 10 0.02 Orthogroups_2024-Update
Glyma.01G029200 No alias Ribosomal protein S27a / Ubiquitin family protein 0.05 Orthogroups_2024-Update
Glyma.02G036000 No alias Ribosomal protein S27a / Ubiquitin family protein 0.09 Orthogroups_2024-Update
Glyma.03G197600 No alias ubiquitin extension protein 1 0.05 Orthogroups_2024-Update
Glyma.04G231500 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.04 Orthogroups_2024-Update
Glyma.09G023700 No alias Ribosomal protein S27a / Ubiquitin family protein 0.13 Orthogroups_2024-Update
Glyma.15G129800 No alias Ribosomal protein S27a / Ubiquitin family protein 0.04 Orthogroups_2024-Update
Glyma.19G195500 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.12 Orthogroups_2024-Update
HORVU1Hr1G023660.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.09 Orthogroups_2024-Update
HORVU4Hr1G001170.5 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
HORVU7Hr1G102840.1 No alias UBQ ubiquitin-fold protein 0.02 Orthogroups_2024-Update
Kfl00345_0130 kfl00345_0130_v1.... (at3g52590 : 254.0) Ubiquitin extension protein;... 0.04 Orthogroups_2024-Update
MA_10435699g0020 No alias (at2g47110 : 231.0) polyubiquitin gene; ubiquitin 6... 0.05 Orthogroups_2024-Update
MA_13101g0020 No alias (at3g52590 : 257.0) Ubiquitin extension protein;... 0.06 Orthogroups_2024-Update
MA_529552g0010 No alias (at3g62250 : 229.0) ubiquitin 5 (UBQ5); FUNCTIONS IN:... 0.03 Orthogroups_2024-Update
MA_53043g0010 No alias (at1g31340 : 234.0) Encodes a ubiquitin-related protein... 0.03 Orthogroups_2024-Update
Mp7g12490.1 No alias component RPL40 of LSU proteome component 0.02 Orthogroups_2024-Update
Mp7g14690.1 No alias component RPS27a of SSU proteome 0.12 Orthogroups_2024-Update
Mp8g00780.1 No alias component RPL40 of LSU proteome component 0.08 Orthogroups_2024-Update
Potri.001G025300 No alias ubiquitin 6 0.03 Orthogroups_2024-Update
Potri.012G024300 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.06 Orthogroups_2024-Update
Potri.014G115100 No alias ubiquitin 6 0.03 Orthogroups_2024-Update
Potri.015G007100 No alias ubiquitin extension protein 1 0.02 Orthogroups_2024-Update
Pp1s13_40V6 No alias ubiquitin extension protein 0.07 Orthogroups_2024-Update
Pp1s184_64V6 No alias ubiquitin extension protein 0.05 Orthogroups_2024-Update
Pp1s241_60V6 No alias ubiquitin fusion protein 0.03 Orthogroups_2024-Update
Pp1s268_35V6 No alias ubiquitin fusion protein 0.02 Orthogroups_2024-Update
Pp1s333_9V6 No alias ubiquitin fusion protein 0.07 Orthogroups_2024-Update
Pp1s56_39V6 No alias ubiquitin extension protein 0.07 Orthogroups_2024-Update
Pp1s56_52V6 No alias ubiquitin extension protein 0.07 Orthogroups_2024-Update
Seita.2G133700.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.08 Orthogroups_2024-Update
Seita.5G156000.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.09 Orthogroups_2024-Update
Seita.7G270700.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.18 Orthogroups_2024-Update
Seita.9G478400.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Sobic.001G444800.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.19 Orthogroups_2024-Update
Sobic.002G135200.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.14 Orthogroups_2024-Update
Sobic.003G152600.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.16 Orthogroups_2024-Update
Sobic.009G054800.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.19 Orthogroups_2024-Update
Solyc01g056940 No alias Ubiquitin 0.17 Orthogroups_2024-Update
Solyc01g096290 No alias ubiquitin-ribosomal fusion protein 0.16 Orthogroups_2024-Update
Solyc08g008590 No alias ubiquitin-ribosomal fusion protein 0.1 Orthogroups_2024-Update
Solyc08g083120 No alias ubiquitin-ribosomal fusion protein 0.09 Orthogroups_2024-Update
Solyc12g098940 No alias Ubiquitin, putative (AHRD V3.3 *** B9RN74_RICCO) 0.09 Orthogroups_2024-Update
Solyc12g099030 No alias Ubiquitin, putative (AHRD V3.3 *** B9RN74_RICCO) 0.15 Orthogroups_2024-Update
Sopen01g029970 No alias Ubiquitin family 0.12 Orthogroups_2024-Update
Sopen01g040060 No alias Ubiquitin family 0.1 Orthogroups_2024-Update
Sopen03g022330 No alias Ubiquitin family 0.09 Orthogroups_2024-Update
Sopen08g004410 No alias Ubiquitin family 0.13 Orthogroups_2024-Update
Sopen08g031340 No alias Ubiquitin family 0.2 Orthogroups_2024-Update
Sopen11g001620 No alias Ubiquitin family 0.07 Orthogroups_2024-Update
Sopen12g033690 No alias Ubiquitin family 0.05 Orthogroups_2024-Update
Sopen12g033760 No alias Ubiquitin family 0.1 Orthogroups_2024-Update
evm.model.contig_2055.11 No alias (at3g52590 : 241.0) Ubiquitin extension protein;... 0.1 Orthogroups_2024-Update
evm.model.contig_3445.1 No alias no hits & (original description: no original description) 0.16 Orthogroups_2024-Update
evm.model.tig00001336.12 No alias (at3g62250 : 155.0) ubiquitin 5 (UBQ5); FUNCTIONS IN:... 0.01 Orthogroups_2024-Update
evm.model.tig00022075.50 No alias (at3g52590 : 236.0) Ubiquitin extension protein;... 0.11 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0003937 IMP cyclohydrolase activity IEP Predicted GO
MF GO:0004055 argininosuccinate synthase activity IEP Predicted GO
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Predicted GO
MF GO:0004784 superoxide dismutase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006163 purine nucleotide metabolic process IEP Predicted GO
BP GO:0006164 purine nucleotide biosynthetic process IEP Predicted GO
BP GO:0006177 GMP biosynthetic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006525 arginine metabolic process IEP Predicted GO
BP GO:0006526 arginine biosynthetic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006753 nucleoside phosphate metabolic process IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
BP GO:0009117 nucleotide metabolic process IEP Predicted GO
BP GO:0009119 ribonucleoside metabolic process IEP Predicted GO
BP GO:0009163 nucleoside biosynthetic process IEP Predicted GO
BP GO:0009165 nucleotide biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042278 purine nucleoside metabolic process IEP Predicted GO
BP GO:0042451 purine nucleoside biosynthetic process IEP Predicted GO
BP GO:0042455 ribonucleoside biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046037 GMP metabolic process IEP Predicted GO
BP GO:0046128 purine ribonucleoside metabolic process IEP Predicted GO
BP GO:0046129 purine ribonucleoside biosynthetic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0072521 purine-containing compound metabolic process IEP Predicted GO
BP GO:0072522 purine-containing compound biosynthetic process IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
BP GO:1901068 guanosine-containing compound metabolic process IEP Predicted GO
BP GO:1901070 guanosine-containing compound biosynthetic process IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:1901659 glycosyl compound biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 114 167
IPR000626 Ubiquitin_dom 48 113
No external refs found!