Bradi4g15710

Description : ubiquitin-specific protease 12

Gene families : OG_42_0001109 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001109_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium release: Bradi4g15710
Cluster	HCCA clusters: Cluster_7

Target	Alias	Description	ECC score	Gene Family Method
444302	No alias	ubiquitin-specific protease 12	0.05	Orthogroups_2024-Update
Cre07.g336200	No alias	ubiquitin-specific protease 12	0.02	Orthogroups_2024-Update
GRMZM2G014805	No alias	ubiquitin-specific protease 12	0.03	Orthogroups_2024-Update
Glyma.02G271500	No alias	ubiquitin-specific protease 12	0.02	Orthogroups_2024-Update
Glyma.10G120900	No alias	ubiquitin-specific protease 13	0.04	Orthogroups_2024-Update
Glyma.13G027800	No alias	ubiquitin-specific protease 13	0.06	Orthogroups_2024-Update
Glyma.14G044500	No alias	ubiquitin-specific protease 12	0.08	Orthogroups_2024-Update
Glyma.20G054600	No alias	ubiquitin-specific protease 13	0.08	Orthogroups_2024-Update
HORVU2Hr1G058700.4	No alias	deubiquitinase (UBP12-13) & deubiquitinase (UBP12-13)	0.07	Orthogroups_2024-Update
HORVU3Hr1G075220.5	No alias	deubiquitinase (UBP12-13) & deubiquitinase (UBP12-13)	0.03	Orthogroups_2024-Update
HORVU3Hr1G075250.1	No alias	deubiquitinase (UBP12-13) & deubiquitinase (UBP12-13)	0.05	Orthogroups_2024-Update
HORVU5Hr1G031980.11	No alias	deubiquitinase (UBP12-13) & deubiquitinase (UBP12-13)	0.05	Orthogroups_2024-Update
Kfl00179_0090	kfl00179_0090_v1....	(at5g06600 : 1295.0) Encodes a ubiquitin-specific...	0.02	Orthogroups_2024-Update
PSME_00002354-RA	No alias	(at5g06600 : 1600.0) Encodes a ubiquitin-specific...	0.03	Orthogroups_2024-Update
PSME_00006859-RA	No alias	(at3g11910 : 1264.0) ubiquitin-specific protease 13...	0.05	Orthogroups_2024-Update
PSME_00008044-RA	No alias	(at5g06600 : 1769.0) Encodes a ubiquitin-specific...	0.05	Orthogroups_2024-Update
Potri.006G198300	No alias	ubiquitin-specific protease 12	0.02	Orthogroups_2024-Update
Pp1s104_2V6	No alias	ubiquitin carboxyl-terminal	0.04	Orthogroups_2024-Update
Pp1s123_138V6	No alias	ubiquitin carboxyl-terminal	0.03	Orthogroups_2024-Update
Pp1s42_181V6	No alias	ubiquitin carboxyl-terminal	0.03	Orthogroups_2024-Update
Seita.2G042100.1	No alias	deubiquitinase (UBP12-13) & deubiquitinase (UBP12-13)	0.06	Orthogroups_2024-Update
Seita.3G361900.1	No alias	deubiquitinase (UBP12-13) & deubiquitinase (UBP12-13)	0.08	Orthogroups_2024-Update
Seita.5G334000.1	No alias	deubiquitinase (UBP12-13) & deubiquitinase (UBP12-13)	0.04	Orthogroups_2024-Update
Seita.8G159100.1	No alias	deubiquitinase (UBP12-13) & deubiquitinase (UBP12-13)	0.07	Orthogroups_2024-Update
Sobic.002G042600.1	No alias	deubiquitinase (UBP12-13) & deubiquitinase (UBP12-13)	0.07	Orthogroups_2024-Update
Sobic.005G162500.1	No alias	deubiquitinase (UBP12-13) & deubiquitinase (UBP12-13)	0.07	Orthogroups_2024-Update
Solyc05g055090	No alias	Ubiquitin carboxyl-terminal hydrolase 12 (AHRD V3.3 ***...	0.03	Orthogroups_2024-Update
Solyc11g071700	No alias	Ubiquitin carboxyl-terminal hydrolase 12-like protein...	0.05	Orthogroups_2024-Update
evm.model.contig_4460.4	No alias	(at5g06600 : 402.0) Encodes a ubiquitin-specific...	0.03	Orthogroups_2024-Update
evm.model.tig00021350.30	No alias	(at5g06600 : 524.0) Encodes a ubiquitin-specific...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	InterProScan predictions
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016579	protein deubiquitination	IEA	InterProScan predictions
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019783	ubiquitin-like protein-specific protease activity	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	IEA	InterProScan predictions
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0101005	ubiquitinyl hydrolase activity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	Predicted GO
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	Predicted GO
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003712	transcription coregulator activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0004386	helicase activity	IEP	Predicted GO
MF	GO:0004402	histone acetyltransferase activity	IEP	Predicted GO
MF	GO:0004525	ribonuclease III activity	IEP	Predicted GO
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Predicted GO
MF	GO:0004843	thiol-dependent ubiquitin-specific protease activity	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
CC	GO:0005634	nucleus	IEP	Predicted GO
CC	GO:0005694	chromosome	IEP	Predicted GO
BP	GO:0006325	chromatin organization	IEP	Predicted GO
BP	GO:0006401	RNA catabolic process	IEP	Predicted GO
BP	GO:0006402	mRNA catabolic process	IEP	Predicted GO
BP	GO:0006473	protein acetylation	IEP	Predicted GO
BP	GO:0006475	internal protein amino acid acetylation	IEP	Predicted GO
BP	GO:0006606	protein import into nucleus	IEP	Predicted GO
BP	GO:0006886	intracellular protein transport	IEP	Predicted GO
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	Predicted GO
BP	GO:0006913	nucleocytoplasmic transport	IEP	Predicted GO
MF	GO:0008080	N-acetyltransferase activity	IEP	Predicted GO
BP	GO:0008104	protein localization	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
MF	GO:0008270	zinc ion binding	IEP	Predicted GO
MF	GO:0008536	Ran GTPase binding	IEP	Predicted GO
BP	GO:0015031	protein transport	IEP	Predicted GO
BP	GO:0015833	peptide transport	IEP	Predicted GO
BP	GO:0016043	cellular component organization	IEP	Predicted GO
BP	GO:0016071	mRNA metabolic process	IEP	Predicted GO
MF	GO:0016407	acetyltransferase activity	IEP	Predicted GO
MF	GO:0016410	N-acyltransferase activity	IEP	Predicted GO
CC	GO:0016459	myosin complex	IEP	Predicted GO
MF	GO:0016462	pyrophosphatase activity	IEP	Predicted GO
BP	GO:0016569	covalent chromatin modification	IEP	Predicted GO
BP	GO:0016570	histone modification	IEP	Predicted GO
BP	GO:0016573	histone acetylation	IEP	Predicted GO
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Predicted GO
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Predicted GO
MF	GO:0017016	Ras GTPase binding	IEP	Predicted GO
BP	GO:0017038	protein import	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Predicted GO
BP	GO:0018193	peptidyl-amino acid modification	IEP	Predicted GO
BP	GO:0018205	peptidyl-lysine modification	IEP	Predicted GO
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	Predicted GO
BP	GO:0018394	peptidyl-lysine acetylation	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Predicted GO
MF	GO:0019899	enzyme binding	IEP	Predicted GO
BP	GO:0022406	membrane docking	IEP	Predicted GO
MF	GO:0030554	adenyl nucleotide binding	IEP	Predicted GO
MF	GO:0031267	small GTPase binding	IEP	Predicted GO
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0033036	macromolecule localization	IEP	Predicted GO
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	Predicted GO
BP	GO:0034504	protein localization to nucleus	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
BP	GO:0042886	amide transport	IEP	Predicted GO
MF	GO:0043167	ion binding	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
CC	GO:0043226	organelle	IEP	Predicted GO
CC	GO:0043227	membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043229	intracellular organelle	IEP	Predicted GO
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Predicted GO
BP	GO:0043543	protein acylation	IEP	Predicted GO
CC	GO:0044424	intracellular part	IEP	Predicted GO
CC	GO:0044464	cell part	IEP	Predicted GO
BP	GO:0045184	establishment of protein localization	IEP	Predicted GO
BP	GO:0046907	intracellular transport	IEP	Predicted GO
BP	GO:0048278	vesicle docking	IEP	Predicted GO
MF	GO:0051020	GTPase binding	IEP	Predicted GO
BP	GO:0051169	nuclear transport	IEP	Predicted GO
BP	GO:0051170	import into nucleus	IEP	Predicted GO
BP	GO:0051640	organelle localization	IEP	Predicted GO
BP	GO:0051641	cellular localization	IEP	Predicted GO
BP	GO:0051649	establishment of localization in cell	IEP	Predicted GO
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	Predicted GO
BP	GO:0071702	organic substance transport	IEP	Predicted GO
BP	GO:0071705	nitrogen compound transport	IEP	Predicted GO
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
BP	GO:0140029	exocytic process	IEP	Predicted GO
BP	GO:0140056	organelle localization by membrane tethering	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001394	Peptidase_C19_UCH	201	522
IPR024729	USP7_ICP0-binding_dom	626	878
IPR029346	USP_C	888	1097
IPR002083	MATH/TRAF_dom	63	183

External Links

No external refs found!

Bradi4g15710

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation