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  5. Bradi5g17900

Bradi5g17900


Description : Plant VAMP (vesicle-associated membrane protein) family protein


Gene families : OG_42_0000404 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000404_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi5g17900
Cluster HCCA clusters: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
At4g00170 No alias Vesicle-associated protein 1-3... 0.02 Orthogroups_2024-Update
Brara.B02949.1 No alias contact site protein (VAP27) of... 0.02 Orthogroups_2024-Update
Brara.H02856.1 No alias contact site protein (VAP27) of... 0.02 Orthogroups_2024-Update
Glyma.11G032000 No alias plant VAP homolog 12 0.03 Orthogroups_2024-Update
Glyma.15G098400 No alias vamp/synaptobrevin-associated protein 27-2 0.02 Orthogroups_2024-Update
LOC_Os08g06020 No alias MSP domain containing protein, expressed 0.03 Orthogroups_2024-Update
PSME_00040833-RA No alias (at3g60600 : 125.0) Encodes VAP27 (for... 0.03 Orthogroups_2024-Update
Potri.001G152000 No alias vesicle associated protein 0.03 Orthogroups_2024-Update
Seita.3G266100.1 No alias contact site protein (VAP27) of... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP Predicted GO
BP GO:0006308 DNA catabolic process IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000535 MSP_dom 6 101
No external refs found!