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  5. Bradi5g19367

Bradi5g19367


Description : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain


Gene families : OG_42_0000452 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi5g19367
Cluster HCCA clusters: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
A4A49_08213 No alias ultraviolet-b receptor uvr8 0.02 Orthogroups_2024-Update
A4A49_39411 No alias ultraviolet-b receptor uvr8 0.02 Orthogroups_2024-Update
HORVU2Hr1G124270.6 No alias Unknown function 0.05 Orthogroups_2024-Update
HORVU7Hr1G038070.31 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os04g49430 No alias ZR1 protein, putative, expressed 0.02 Orthogroups_2024-Update
Potri.017G139600 No alias Regulator of chromosome condensation (RCC1) family with... 0.02 Orthogroups_2024-Update
Sopen12g034380 No alias Regulator of chromosome condensation (RCC1) repeat 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 478 527
IPR000408 Reg_chr_condens 582 631
IPR000408 Reg_chr_condens 310 358
IPR000408 Reg_chr_condens 416 465
IPR000306 Znf_FYVE 641 697
IPR027988 BRX_N 872 901
IPR013591 Brevis_radix_dom 985 1037
No external refs found!