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  5. Bradi5g20040

Bradi5g20040


Description : Transducin family protein / WD-40 repeat family protein


Gene families : OG_42_0001305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001305_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi5g20040
Cluster HCCA clusters: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
At5g16750 No alias Transducin family protein / WD-40 repeat family protein... 0.09 Orthogroups_2024-Update
Brara.B00677.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.J02073.1 No alias SSU processome assembly factor *(TOZ) 0.07 Orthogroups_2024-Update
Cre07.g344050 No alias Transducin family protein / WD-40 repeat family protein 0.07 Orthogroups_2024-Update
GRMZM2G014276 No alias Transducin family protein / WD-40 repeat family protein 0.09 Orthogroups_2024-Update
Glyma.05G038000 No alias Transducin family protein / WD-40 repeat family protein 0.03 Orthogroups_2024-Update
Glyma.17G089100 No alias Transducin family protein / WD-40 repeat family protein 0.07 Orthogroups_2024-Update
HORVU2Hr1G106110.11 No alias SSU processome assembly factor *(TOZ) 0.18 Orthogroups_2024-Update
Kfl00871_0040 kfl00871_0040_v1.1 (at5g16750 : 795.0) Encodes a nucleolar localized WD-40... 0.07 Orthogroups_2024-Update
Mp8g08070.1 No alias SSU processome assembly factor (TOZ) 0.05 Orthogroups_2024-Update
Potri.013G079600 No alias Transducin family protein / WD-40 repeat family protein 0.1 Orthogroups_2024-Update
Pp1s301_39V6 No alias wd40-repeat protein 0.06 Orthogroups_2024-Update
Seita.7G219600.1 No alias SSU processome assembly factor *(TOZ) 0.16 Orthogroups_2024-Update
Sobic.006G198600.1 No alias SSU processome assembly factor *(TOZ) 0.22 Orthogroups_2024-Update
Solyc03g097160 No alias Transducin/WD40 repeat-like superfamily protein (AHRD... 0.2 Orthogroups_2024-Update
Sopen03g027900 No alias WD domain, G-beta repeat 0.11 Orthogroups_2024-Update
evm.model.contig_3462.1 No alias (at5g16750 : 203.0) Encodes a nucleolar localized WD-40... 0.08 Orthogroups_2024-Update
evm.model.tig00000704.60 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.tig00000704.61 No alias (at5g16750 : 313.0) Encodes a nucleolar localized WD-40... 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
BP GO:0006364 rRNA processing IEA InterProScan predictions
CC GO:0032040 small-subunit processome IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEP Predicted GO
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006144 purine nucleobase metabolic process IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0009112 nucleobase metabolic process IEP Predicted GO
BP GO:0009113 purine nucleobase biosynthetic process IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016778 diphosphotransferase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0046112 nucleobase biosynthetic process IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 538 570
IPR001680 WD40_repeat 394 434
IPR001680 WD40_repeat 103 140
IPR001680 WD40_repeat 439 477
IPR001680 WD40_repeat 189 226
IPR001680 WD40_repeat 72 98
IPR001680 WD40_repeat 575 612
IPR001680 WD40_repeat 618 654
IPR001680 WD40_repeat 146 184
IPR001680 WD40_repeat 499 529
IPR013934 SSU_processome_Utp13 677 810
No external refs found!