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  5. Bradi5g21150

Bradi5g21150


Description : RING/FYVE/PHD zinc finger superfamily protein


Gene families : OG_42_0003084 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003084_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi5g21150
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
A4A49_08197 No alias hypothetical protein 0.02 Orthogroups_2024-Update
Bradi3g18077 No alias RING/FYVE/PHD zinc finger superfamily protein 0.02 Orthogroups_2024-Update
Cre01.g053250 No alias RING/FYVE/PHD zinc finger superfamily protein 0.03 Orthogroups_2024-Update
Cre02.g095045 No alias RING/FYVE/PHD zinc finger superfamily protein 0.01 Orthogroups_2024-Update
Cre13.g578501 No alias RING/FYVE/PHD zinc finger superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G155949 No alias RING/FYVE/PHD zinc finger superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G233702 No alias RING/FYVE/PHD zinc finger superfamily protein 0.06 Orthogroups_2024-Update
Glyma.15G219200 No alias RING/FYVE/PHD zinc finger superfamily protein 0.04 Orthogroups_2024-Update
HORVU2Hr1G100080.7 No alias Unknown function 0.07 Orthogroups_2024-Update
LOC_Os04g52020 No alias PHD-finger domain containing protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g12680 No alias zinc finger domain, LSD1 subclass family protein, expressed 0.02 Orthogroups_2024-Update
Pp1s1_764V6 No alias sbno1_rat ame: full=protein strawberry notch homolog 1 0.02 Orthogroups_2024-Update
Seita.7G231900.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Sobic.006G209850.1 No alias Unknown function 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR039187 SNO_AAA 384 684
IPR026937 SBNO_Helicase_C_dom 952 1240
IPR019787 Znf_PHD-finger 864 911
No external refs found!