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Bradi5g22017


Description : WD40/YVTN repeat-like-containing domain;Bromodomain


Gene families : OG_42_0003953 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003953_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi5g22017
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
A4A49_18475 No alias dynein assembly factor with wdr repeat domains 1 0.02 Orthogroups_2024-Update
AC218457.2_FG013 No alias WD40/YVTN repeat-like-containing domain;Bromodomain 0.06 Orthogroups_2024-Update
At2g47410 No alias WD40/YVTN repeat-like-containing domain;Bromodomain... 0.04 Orthogroups_2024-Update
Cre02.g078150 No alias WD40/YVTN repeat-like-containing domain;Bromodomain 0.01 Orthogroups_2024-Update
Glyma.09G037300 No alias WD40/YVTN repeat-like-containing domain;Bromodomain 0.05 Orthogroups_2024-Update
Glyma.15G142600 No alias WD40/YVTN repeat-like-containing domain;Bromodomain 0.07 Orthogroups_2024-Update
HORVU5Hr1G002030.2 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase complex 0.04 Orthogroups_2024-Update
PSME_00015837-RA No alias (at2g47410 : 971.0) WD40/YVTN repeat-like-containing... 0.04 Orthogroups_2024-Update
Pp1s19_18V6 No alias bromodomain and WD repeat domain-containing protein 0.02 Orthogroups_2024-Update
Seita.9G430500.1 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase complex 0.12 Orthogroups_2024-Update
Sobic.003G059750.1 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase complex 0.11 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 277 312
IPR001680 WD40_repeat 576 615
IPR001680 WD40_repeat 319 358
IPR001680 WD40_repeat 234 270
IPR001680 WD40_repeat 394 423
No external refs found!