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  5. Bradi5g26400

Bradi5g26400


Description : Function unknown


Gene families : OG_42_0005877 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005877_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi5g26400
Cluster HCCA clusters: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
270362 No alias Function unknown 0.02 Orthogroups_2024-Update
At1g31660 No alias Bystin-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RWS4] 0.07 Orthogroups_2024-Update
Brara.G00543.1 No alias SSU processome assembly factor *(ENP1) 0.14 Orthogroups_2024-Update
Cre01.g063267 No alias Function unknown 0.13 Orthogroups_2024-Update
GRMZM2G052178 No alias Function unknown 0.08 Orthogroups_2024-Update
Glyma.03G190900 No alias Function unknown 0.03 Orthogroups_2024-Update
Pp1s51_33V6 No alias F27M3.14; bystin family [Arabidopsis thaliana] 0.05 Orthogroups_2024-Update
Seita.3G013300.1 No alias SSU processome assembly factor *(ENP1) 0.05 Orthogroups_2024-Update
Sobic.006G269900.1 No alias SSU processome assembly factor *(ENP1) 0.07 Orthogroups_2024-Update
Solyc07g056550 No alias bystin-like protein (AHRD V3.3 *** AT1G31660.1) 0.05 Orthogroups_2024-Update
Sopen07g029910 No alias Bystin 0.04 Orthogroups_2024-Update
evm.model.contig_3557.2 No alias (at1g31660 : 275.0) CONTAINS InterPro DOMAIN/s: Bystin... 0.03 Orthogroups_2024-Update
evm.model.tig00000829.16 No alias (at1g31660 : 299.0) CONTAINS InterPro DOMAIN/s: Bystin... 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016778 diphosphotransferase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007955 Bystin 147 429
No external refs found!